Mercurial > repos > galaxyp > maxquant
diff test-data/01/combined/txt/mzTab.mzTab @ 21:8934bc76bb52 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
| author | galaxyp |
|---|---|
| date | Mon, 19 Jun 2023 17:02:17 +0000 |
| parents | 0839f84def5e |
| children |
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--- a/test-data/01/combined/txt/mzTab.mzTab Tue Jan 31 18:14:40 2023 +0000 +++ b/test-data/01/combined/txt/mzTab.mzTab Mon Jun 19 17:02:17 2023 +0000 @@ -3,7 +3,7 @@ MTD mzTab-type Identification MTD title null MTD description null -MTD software[1] [MS, MS:1001583, MaxQuant,1.6.17.0] +MTD software[1] [MS, MS:1001583, MaxQuant,2.0.3.0] COM [, CHEMMOD:57.0214637236, Carbamidomethyl (C),] MTD fixed_mod[1] [, , CHEMMOD:57.0214637236,] MTD fixed_mod[1]-site C @@ -17,26 +17,26 @@ MTD psm_search_engine_score[1] [MS, MS:1002338, Andromeda:score, ] MTD psm_search_engine_score[2] [MS, MS:1002995, Andromeda PEP, ] MTD ms_run[1]-format [MS, , ,] -MTD ms_run[1]-location file:///tmp/tmp9jbmb6lc/job_working_directory/000/3/working/BSA_min_23.mzXML +MTD ms_run[1]-location file:///tmp/tmphsgikyer/job_working_directory/000/3/working/BSA_min_23.mzXML MTD ms_run[1]-id_format [MS, , ,] PRH accession description taxid species database database_version search_engine best_search_engine_score[1] search_engine_score[1]_ms_run[1] num_psms_ms_run[1] num_peptides_distinct_ms_run[1] num_peptides_unique_ms_run[1] ambiguity_members modifications protein_coverage -PRT CON__P02769 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 6.33205607832812 null null null null CON__P02769, bsa, CON__P02768-1 null 0.012 -PRT CON__ENSEMBL:ENSBTAP00000001528 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.93746772688895 null null null null CON__ENSEMBL:ENSBTAP00000001528 null 0.008 -PRT CON__ENSEMBL:ENSBTAP00000016046 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.97677849538172 null null null null CON__ENSEMBL:ENSBTAP00000016046 null 0.01 -PRT CON__ENSEMBL:ENSBTAP00000018574 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.95544937626172 null null null null CON__ENSEMBL:ENSBTAP00000018574 null 0.016 -PRT CON__Q03247 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 5.93746772688895 null null null null CON__Q03247 null 0.025 -PRT CON__Q14CN4-1 null null null /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002337, Andromeda, 1.6.17.0] 6.1237531147968 null null null null CON__Q14CN4-1, CON__Q3SY84, CON__Q9R0H5 null 0.016 +PRT CON__P02769 null null null /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002337, Andromeda, 2.0.3.0] 6.33205607832812 null null null null CON__P02769, bsa, CON__P02768-1 null 0.012 +PRT CON__ENSEMBL:ENSBTAP00000001528 null null null /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002337, Andromeda, 2.0.3.0] 5.93746772688895 null null null null CON__ENSEMBL:ENSBTAP00000001528 null 0.008 +PRT CON__ENSEMBL:ENSBTAP00000016046 null null null /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002337, Andromeda, 2.0.3.0] 5.97677849538172 null null null null CON__ENSEMBL:ENSBTAP00000016046 null 0.01 +PRT CON__ENSEMBL:ENSBTAP00000018574 null null null /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002337, Andromeda, 2.0.3.0] 5.95544937626172 null null null null CON__ENSEMBL:ENSBTAP00000018574 null 0.016 +PRT CON__Q03247 null null null /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002337, Andromeda, 2.0.3.0] 5.93746772688895 null null null null CON__Q03247 null 0.025 +PRT CON__Q14CN4-1 null null null /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002337, Andromeda, 2.0.3.0] 6.1237531147968 null null null null CON__Q14CN4-1, CON__Q3SY84, CON__Q9R0H5 null 0.016 PSH sequence PSM_ID accession unique database database_version search_engine search_engine_score[1] search_engine_score[2] modifications retention_time charge exp_mass_to_charge calc_mass_to_charge spectra_ref pre post start end opt_global_cv_MS:1000776_scan_number_only_nativeID_format opt_global_cv_MS:1002217_decoy_peptide -PSM DSFDIIK 1 CON__ENSEMBL:ENSBTAP00000016046 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.010549248059121 null 0.570428333333333 2 419.2213 419.2213 ms_run[1]:scan=96 R R 646 652 96 0 -PSM LLESEECR 2 CON__Q14CN4-1 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0 -PSM LLESEECR 2 CON__Q3SY84 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0 -PSM LLESEECR 2 CON__Q9R0H5 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0 -PSM LVTDLTK 3 CON__P02769 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0 -PSM LVTDLTK 3 bsa 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0 -PSM LVTDLTK 3 CON__P02768-1 0 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0 -PSM QLELEKQLEK 4 CON__ENSEMBL:ENSBTAP00000001528 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.0115486780155693 null 0.570428333333333 3 419.9065 419.9065 ms_run[1]:scan=96 R Q 408 417 96 0 -PSM SLSAIRER 5 CON__Q03247 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.0115486780155693 null 0.0965533333333333 2 466.2696 466.2696 ms_run[1]:scan=17 R F 190 197 17 0 -PSM TLGPWGQR 6 CON__ENSEMBL:ENSBTAP00000018574 1 /tmp/tmp9jbmb6lc/files/7/5/d/dataset_75d9a22a-c00d-4c98-b445-0f54e57ec138.dat; null [MS, MS:1002338, Andromeda:score, 1.6.17.0] 0 0.0110802771561295 null 0.425933333333333 2 457.746 457.7458 ms_run[1]:scan=72 R D 20 27 72 0 +PSM DSFDIIK 1 CON__ENSEMBL:ENSBTAP00000016046 1 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 0 0.010549248059121 null 0.570428333333333 2 419.2213 419.2213 ms_run[1]:scan=96 R R 646 652 96 0 +PSM LLESEECR 2 CON__Q14CN4-1 0 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0 +PSM LLESEECR 2 CON__Q3SY84 0 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0 +PSM LLESEECR 2 CON__Q9R0H5 0 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0 +PSM LVTDLTK 3 CON__P02769 0 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0 +PSM LVTDLTK 3 bsa 0 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0 +PSM LVTDLTK 3 CON__P02768-1 0 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0 +PSM QLELEKQLEK 4 CON__ENSEMBL:ENSBTAP00000001528 1 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 0 0.0115486780155693 null 0.570428333333333 3 419.9065 419.9065 ms_run[1]:scan=96 R Q 408 417 96 0 +PSM SLSAIRER 5 CON__Q03247 1 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 0 0.0115486780155693 null 0.0965533333333333 2 466.2696 466.2696 ms_run[1]:scan=17 R F 190 197 17 0 +PSM TLGPWGQR 6 CON__ENSEMBL:ENSBTAP00000018574 1 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 0 0.0110802771561295 null 0.425933333333333 2 457.746 457.7458 ms_run[1]:scan=72 R D 20 27 72 0