Mercurial > repos > galaxyp > maxquant
diff macros.xml @ 15:97a7f34fcb6a draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
| author | galaxyp |
|---|---|
| date | Wed, 11 Aug 2021 09:24:23 +0000 |
| parents | e42225f8a659 |
| children | 74f5d355d156 |
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--- a/macros.xml Thu Jul 08 22:45:35 2021 +0000 +++ b/macros.xml Wed Aug 11 09:24:23 2021 +0000 @@ -1,7 +1,8 @@ <?xml version="1.0" ?> <macros> <token name="@VERSION@">1.6.17.0</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@VERSION_SUFFIX@">3</token> + <token name="@VERSION_SUFFIX_MQPAR@">0</token> <token name="@VERSION_PTXQC@">1.0.10</token> <token name="@SUBSTITUTION_RX@">[^\w\-\s\.]</token> <token name="@TMT2PLEX@"> @@ -60,6 +61,11 @@ - [TMTpro16plex-Lys134N,TMTpro16plex-Nter134N,0,0,0,0,True] - [TMTpro16plex-Lys126C,TMTpro16plex-Nter126C,0,0,0,0,True] </token> + <token name="@TMTPRO18PLEX@"> + @TMTPRO16PLEX@ + - [TMTpro18plex-Lys134C,TMTpro18plex-Nter134C,0,0,0,0,True] + - [TMTpro18plex-Lys135N,TMTpro18plex-Nter135N,0,0,0,0,True] + </token> <token name="@ITRAQ4PLEX@"> - [iTRAQ4plex-Lys114,iTRAQ4plex-Nter114,0,0,0,0,False] - [iTRAQ4plex-Lys115,iTRAQ4plex-Nter115,0,0,0,0,False] @@ -131,11 +137,18 @@ cont_MYCO: - MYCOPLASMA - '1' + #if $varExists("mqpar_input"): + #import re + #set $mqpar_xml = open(str($mqpar_input), "r").read() + #set $matchingTimeWindow = re.search("matchingTimeWindow>(.*)./matchingTimeWindow", $mqpar_xml).group(1) + MQpar_MatchingTimeWindow_num: ${matchingTimeWindow} + #else: #if $search_opts.mbr.match_between_runs == 'True': MQpar_MatchingTimeWindow_num: ${search_opts.mbr.matching_time_window} #else: MQpar_MatchingTimeWindow_num: 0.0 #end if + #end if MatchBetweenRuns_wA: auto MQpar_firstSearchTol_num: 20.0 firstSearch_outOfCalWarnSD_num: 2.0 @@ -829,6 +842,10 @@ <expand macro="mod_option" value="TMTpro16plex-Lys133N"/> <expand macro="mod_option" value="TMTpro16plex-Lys133C"/> <expand macro="mod_option" value="TMTpro16plex-Lys134N"/> + <expand macro="mod_option" value="TMTpro18plex-Nter134C"/> + <expand macro="mod_option" value="TMTpro18plex-Nter135N"/> + <expand macro="mod_option" value="TMTpro18plex-Lys134C"/> + <expand macro="mod_option" value="TMTpro18plex-Lys135N"/> </xml> <xml name="citations"> <citations>