diff README.md @ 0:d4b6c9eae635 draft

Initial commit.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.md	Fri May 10 17:22:51 2013 -0400
@@ -0,0 +1,34 @@
+Tool wrapper for MaxQuant. 
+
+MaxQuant is a Windows only program and so you will likely need to
+deploy this tool to run on a remote Windows system via the LWR
+(https://lwr.readthedocs.org).
+
+The sample mods file maxquant_mods.loc.sample corresponds to the
+default modifications MaxQuant is configured with. The Galaxy-P
+project uses a MaxQuant that has been extended with all of Unimod. To
+modify MaxQuant in this fashion replace MaxQuant's modifications.xml
+file with the extended_modifications.xml distributed with this tool
+and configure Galaxy with the maxquant_mods.loc.sample.extended loc
+file.# Obtaining Tools
+
+Repositories for all Galaxy-P tools can be found at
+https:/bitbucket.org/galaxyp/.
+
+# Contact
+
+Please send suggestions for improvements and bug reports to
[e-mail].
+
+# License
+
+All Galaxy-P tools are licensed under the Apache License Version 2.0
+unless otherwise documented.
+
+# Tool Versioning
+
+Galaxy-P tools will have versions of the form X.Y.Z. Versions
+differing only after the second decimal should be completely
+compatible with each other. Breaking changes should result in an
+increment of the number before and/or after the first decimal. All
+tools of version less than 1.0.0 should be considered beta.