diff test-data/03/config.yml @ 4:dcd39bcc7481 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/03/config.yml	Sat Apr 11 11:49:19 2020 -0400
@@ -0,0 +1,29 @@
+
+            fastaFiles: [/tmp/tmpQsmPD9/files/7/b/e/dataset_7be42b54-5eac-4f1d-a6bb-0b85e8f1bd67.dat]
+            parseRules:
+              identifierParseRule: '^>.*\|(.*)\|.*$'
+              descriptionParseRule: '^>.*\|.*\|[^ ]+ (.*) OS.*$'
+            minUniquePeptides: 1
+            minPepLen: 7
+            maxPeptideMass: 4600
+            calcPeakProperties: False
+            writeMzTab: False
+            ibaq: True
+            ibaqLogFit: False
+            separateLfq: False
+            lfqStabilizeLargeRatios: True
+            lfqRequireMsms: True
+            advancedSiteIntensities: True
+            matchBetweenRuns: False
+            paramGroups:
+              - files: ['BSA_min_22.mzxml']
+                maxMissedCleavages: 1
+                fixedModifications: [Carbamidomethyl (C)]
+                variableModifications: [Oxidation (M)]
+                enzymes: [Trypsin/P]
+                lfqMode: 1
+                lfqSkipNorm: True
+                lfqMinEdgesPerNode: 3
+                lfqAvEdgesPerNode: 6
+                lfqMinRatioCount: 2
+        
\ No newline at end of file