Mercurial > repos > galaxyp > maxquant

diff test-data/04/config.yml @ 4:dcd39bcc7481 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
author galaxyp
date Sat, 11 Apr 2020 11:49:19 -0400
parents
children 2133b0be850a
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/04/config.yml	Sat Apr 11 11:49:19 2020 -0400
@@ -0,0 +1,26 @@
+
+            fastaFiles: [/home/galaxy/galaxy/database/files/000/dataset_4.dat]
+            parseRules:
+              identifierParseRule: '>([^\s]*)'
+              descriptionParseRule: '>(.*)'
+            minUniquePeptides: 0
+            minPepLen: 7
+            maxPeptideMass: 4600
+            calcPeakProperties: False
+            writeMzTab: False
+            separateLfq: False
+            lfqStabilizeLargeRatios: True
+            lfqRequireMsms: True
+            advancedSiteIntensities: True
+            matchBetweenRuns: False
+            paramGroups:
+              - files: ['BSA_min_23.mzXML', 'BSA_min_22.mzxml']
+                maxMissedCleavages: 2
+                fixedModifications: [Carbamidomethyl (C)]
+                variableModifications: [Oxidation (M)]
+                enzymes: [Trypsin/P]
+                labelMods:
+                  - [Arg6,Lys4]
+                  - []
+                  - [Arg10,DimethLys8]
+        
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