Mercurial > repos > galaxyp > maxquant

view README.md @ 15:97a7f34fcb6a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
author galaxyp
date Wed, 11 Aug 2021 09:24:23 +0000
parents 8bac3cc5c5de
children
line wrap: on
line source

GalaxyP - MaxQuant
==================

* Home: <https://github.com/galaxyproteomics/tools-galaxyp/>
* Tool ID: `maxquant`
* Tool Type: `default`


Description
-----------

Wrapper for the MaxQuant version available in conda.


Updating
--------

MaxQuant often changes the layout of its parameters file.
So changes to the code are likely to be necessary when
updating to a new version of MaxQuant. The init.py script
can be used to initialize the tool with a new list of
modifications or enzymes. From the tool dir run:

./init.py -m MODIFICATIONS.XML -e ENZYMES.XML

The location of these xml files usually is:
ANACONDA_DIR/bin/conf/