view test-data/09/combined/txt/msmsScans.txt @ 15:97a7f34fcb6a draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"

Raw file	Scan number	Retention time	Ion injection time	Total ion current	Collision energy	Summations	Base peak intensity	Elapsed time	Identified	Matched	Reverse	MS/MS IDs	Sequence	Length	Filtered peaks	m/z	Mass	Charge	Type	Fragmentation	Mass analyzer	Parent intensity fraction	Fraction of total spectrum	Base peak fraction	Precursor full scan number	Precursor intensity	Precursor apex fraction	Precursor apex offset	Precursor apex offset time	Scan event number	Modifications	Modified sequence	Proteins	Score	PEP	Experiment	Reporter intensity corrected 1	Reporter intensity corrected 2	Reporter intensity corrected 3	Reporter intensity corrected 4	Reporter intensity corrected 5	Reporter intensity corrected 6	Reporter intensity corrected 7	Reporter intensity corrected 8	Reporter intensity corrected 9	Reporter intensity corrected 10	Reporter intensity corrected 11	Reporter intensity corrected 12	Reporter intensity corrected 13	Reporter intensity corrected 14	Reporter intensity corrected 15	Reporter intensity corrected 16	Reporter intensity corrected 17	Reporter intensity corrected 18	Reporter intensity 1	Reporter intensity 2	Reporter intensity 3	Reporter intensity 4	Reporter intensity 5	Reporter intensity 6	Reporter intensity 7	Reporter intensity 8	Reporter intensity 9	Reporter intensity 10	Reporter intensity 11	Reporter intensity 12	Reporter intensity 13	Reporter intensity 14	Reporter intensity 15	Reporter intensity 16	Reporter intensity 17	Reporter intensity 18	Reporter PIF	Reporter fraction	Intens Comp Factor	CTCD Comp	RawOvFtT	AGC Fill	Scan index	MS scan index	MS scan number
tmt_data_18	4	0.022647	-1	1555.1	35	0	429.62	-1	-			-1	 	0	19	496.5587	NaN	0	PEAK	CID	ITMS	NaN	NaN	NaN	-1	NaN	NaN	0	NaN	1	 	 	 	NaN	NaN	tmt_data_18.mzXML	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0			NaN	NaN	NaN	0	0	2	3
tmt_data_18	6	0.028164	-1	306.22	35	0	210	-1	-			-1	 	0	3	562.254	NaN	0	PEAK	CID	ITMS	NaN	NaN	NaN	-1	NaN	NaN	0	NaN	1	 	 	 	NaN	NaN	tmt_data_18.mzXML	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0			NaN	NaN	NaN	0	1	3	5
tmt_data_18	7	0.030756	-1	76712	0	0	6269.6	-1	-			-1	 	0	84	1	NaN	0	PEAK	CID	FTMS	NaN	NaN	NaN	-1	NaN	NaN	0	NaN	2	 	 	 	NaN	NaN	tmt_data_18.mzXML	437.7	465.76	538.68	473.42	0	662.1	803.52	0	1148.3	592.81	894.98	1139.6	977.11	1107.6	934.33	696.59	576.46	1213.5	437.7	465.76	538.68	473.42	0	662.1	803.52	0	1148.3	592.81	894.98	1139.6	977.11	1107.6	934.33	696.59	576.46	1213.5			NaN	NaN	NaN	0	2	3	5
tmt_data_18	10	0.043625	-1	374.34	35	0	119.96	-1	-		+	-1	GANDSMMM	8	7	604.7506	NaN	0	PEAK	CID	ITMS	NaN	NaN	NaN	-1	NaN	NaN	0	NaN	1	3 Oxidation (M)	_GANDSM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))_	REV__sp|Q8N7M0|DYLT5_HUMAN	0	0.01	tmt_data_18.mzXML	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0			NaN	NaN	NaN	0	3	5	9
tmt_data_18	14	0.05893	-1	417.62	35	0	66.299	-1	-			-1	 	0	10	553.2144	NaN	0	PEAK	CID	ITMS	NaN	NaN	NaN	-1	NaN	NaN	0	NaN	1	 	 	 	NaN	NaN	tmt_data_18.mzXML	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0			NaN	NaN	NaN	0	4	8	13
tmt_data_18	39	0.17826	-1	136.05	35	0	61.009	-1	-		+	-1	QEMEPTR	7	3	404.2059	NaN	0	PEAK	CID	ITMS	NaN	NaN	NaN	-1	NaN	NaN	0	NaN	1	Oxidation (M)	_QEM(Oxidation (M))EPTR_	REV__sp|O15457|MSH4_HUMAN	4.59465663460819	0.01	tmt_data_18.mzXML	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0			NaN	NaN	NaN	0	5	32	38
tmt_data_18	155	0.75055	-1	211.81	35	0	69.087	-1	-			-1	PGTSGWDSCR	10	6	457.2214	NaN	0	PEAK	CID	ITMS	NaN	NaN	NaN	-1	NaN	NaN	0	NaN	1	Unmodified	_PGTSGWDSCR_	CON__Q6KB66-1	0	0.01	tmt_data_18.mzXML	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0			NaN	NaN	NaN	0	6	147	154
tmt_data_18	162	0.781	-1	239.53	35	0	62.874	-1	-		+	-1	MRLQIEQR	8	6	459.9375	NaN	0	PEAK	CID	ITMS	NaN	NaN	NaN	-1	NaN	NaN	0	NaN	1	Unmodified	_MRLQIEQR_	REV__sp|Q8ND30|LIPB2_HUMAN	4.96526132859811	0.01	tmt_data_18.mzXML	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0			NaN	NaN	NaN	0	7	153	161