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view test-data/mqpar/txt/evidence.txt @ 15:97a7f34fcb6a draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
author galaxyp
date Wed, 11 Aug 2021 09:24:23 +0000
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Sequence	Length	Modifications	Modified sequence	Oxidation (M) Probabilities	Oxidation (M) Score Diffs	Acetyl (Protein N-term)	Oxidation (M)	Missed cleavages	Proteins	Leading proteins	Leading razor protein	Type	Raw file	MS/MS m/z	Charge	m/z	Mass	Uncalibrated - Calibrated m/z [ppm]	Uncalibrated - Calibrated m/z [Da]	Mass error [ppm]	Mass error [Da]	Uncalibrated mass error [ppm]	Uncalibrated mass error [Da]	Max intensity m/z 0	Retention time	Retention length	Calibrated retention time	Calibrated retention time start	Calibrated retention time finish	Retention time calibration	Match time difference	Match m/z difference	Match q-value	Match score	Number of data points	Number of scans	Number of isotopic peaks	PIF	Fraction of total spectrum	Base peak fraction	PEP	MS/MS count	MS/MS scan number	Score	Delta score	Combinatorics	Intensity	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Mod. peptide ID	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	Taxonomy IDs
AEFVEVTK	8	Unmodified	_AEFVEVTK_			0	0	0	bsa;CON__P02769	bsa	bsa	MULTI-SECPEP	BSA_min_21	461.747985839844	2	461.74765	921.480748	0	0	0.053791	2.4838E-05	0.053791	2.4838E-05	461.747684636513	0.52947	0.23399	0.52947	0.3685	0.60249	0					14	6	3	0	0	0	0.0055393	1	85	3.3922	3.3922	1	43060		+	0	2	0	0	0	0
DDPHACYSTVFDK	13	Unmodified	_DDPHACYSTVFDK_			0	0	0	bsa;CON__P02769	bsa	bsa	MULTI-MSMS	BSA_min_21	777.835021972656	2	777.830105	1553.64566	0	0	0.83593	0.00065021	0.83593	0.00065021	777.830735936543	0.47149	0.26748	0.47149	0.29786	0.56534	0					10	7	2	0	0	0	0.0081868	1	82	0	0	1	32583		+	1	2	1	1	1	1
ECCHGDLLECADDR	14	Unmodified	_ECCHGDLLECADDR_			0	0	0	bsa;CON__P02769	bsa	bsa	MULTI-MSMS	BSA_min_22	584.229736328125	3	583.892361	1748.65525	0	0	-1.1992	-0.00070022	-1.1992	-0.00070022	583.891878608632	0.42243	0.40142	0.42243	0.19137	0.59279	0					52	16	4	0	0	0	0.011617	2	60	4.06	4.06	1	341370		+	2	2	2	2	2;3	2
ECCHGDLLECADDR	14	Unmodified	_ECCHGDLLECADDR_			0	0	0	bsa;CON__P02769	bsa	bsa	MULTI-MSMS	BSA_min_22	875.332336425781	2	875.334903	1748.65525	0	0	0.27022	0.00023654	0.27022	0.00023654	875.335151892134	0.508	0.18103	0.508	0.41176	0.59279	0					16	8	3	0	0	0	0.011617	1	90	3.6449	3.6449	1	146170		+	3	2	2	2	4	4
FNETTEK	7	Unmodified	_FNETTEK_			0	0	0	CON__REFSEQ:XP_585019	CON__REFSEQ:XP_585019	CON__REFSEQ:XP_585019	MULTI-SECPEP	BSA_min_21	868.867431640625	1	868.404689	867.397412	0	0	1.5512	0.0013471	1.5512	0.0013471	868.405948529351	0.54676	0.26937	0.54676	0.33312	0.60249	0					14	7	2	0	0	0	0.0030372	1	57	0	0	1	40791		+	4	7	3	3	5	5
GCTTTNSPSTPCQNCSR	17	Unmodified	_GCTTTNSPSTPCQNCSR_			0	0	0	CON__Q6IFU6	CON__Q6IFU6	CON__Q6IFU6	MSMS	BSA_min_21	964.384521484375	2	964.388198	1926.76184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.26375	1	0.26375	-0.23625	0.76375	0								0	0	0	0.016056	1	45	0	0	1			+	5	6	4	4	6	6
GETGPAGPSGAPGPAGSR	18	Unmodified	_GETGPAGPSGAPGPAGSR_			0	0	0	CON__P04258	CON__P04258	CON__P04258	MSMS	BSA_min_21	508.24755859375	3	508.246338	1521.71718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.091825	1	0.091825	-0.40818	0.59183	0								0	0	0	0.014811	1	16	0	0	1			+	6	3	5	5	7	7
LGQYTSPVAK	10	Unmodified	_LGQYTSPVAK_			0	0	0	CON__P01030;CON__ENSEMBL:ENSBTAP00000007350	CON__P01030	CON__P01030	MSMS	BSA_min_21	532.293029785156	2	532.292756	1062.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.057288	1	0.057288	-0.44271	0.55729	6.9389E-18								0	0	0	0.0086806	1	10	9.2141	9.2141	1			+	7	0	6	6	8	8
TSDANINWNNLK	12	Unmodified	_TSDANINWNNLK_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443	MULTI-MSMS	BSA_min_21	463.896636962891	3	463.896757	1388.66844	0	0	0.22645	0.00010505	0.22645	0.00010505	463.896829521798	0.42161	0.33709	0.42161	0.2654	0.60249	0					18	9	3	0	0	0	0.0052683	2	67	2.8669	2.8669	1	99515		+	8	5	7	7	9;10	9
TSDANINWNNLK	12	Unmodified	_TSDANINWNNLK_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443	MULTI-MSMS	BSA_min_21	695.341064453125	2	695.341498	1388.66844	0	0	1.6098	0.0011193	1.6098	0.0011193	695.342847214244	0.40624	0.23684	0.40624	0.29786	0.5347	-5.5511E-17					11	6	2	0	0	0	0.0052683	1	70	0	0	1	38431		+	9	5	7	7	11	11
VLYDAEISQIHQSVTDTNVILSMDNSR	27	Unmodified	_VLYDAEISQIHQSVTDTNVILSMDNSR_			0	0	0	CON__P35908v2;CON__P35908	CON__P35908v2	CON__P35908v2	MULTI-SECPEP	BSA_min_21	508.586730957031	6	508.921773	3047.48698	0	0	-0.029217	-1.4869E-05	-0.029217	-1.4869E-05	509.256120722166	0.35628	0.17335	0.35628	0.2654	0.43874	0					6	4	2	0	0	0	0.00066484	1	73	0	0	1	27010		+	10	4	8	8	12	12
YCGVPGEYWLGNDR	14	Unmodified	_YCGVPGEYWLGNDR_			0	0	0	CON__P02676	CON__P02676	CON__P02676	MULTI-MSMS	BSA_min_21	562.586242675781	3	562.584073	1684.73039	0	0	-0.094318	-5.3062E-05	-0.094318	-5.3062E-05	562.584772670959	0.49991	0.26937	0.49991	0.33312	0.60249	0					23	7	4	0	0	0	0.011617	1	80	0	0	1	78086		+	11	1	9	9	13	13
YCGVPGEYWLGNDR	14	Unmodified	_YCGVPGEYWLGNDR_			0	0	0	CON__P02676	CON__P02676	CON__P02676	MULTI-MSMS	BSA_min_21	843.877807617188	2	843.372472	1684.73039	0	0	1.6858	0.0014217	1.6858	0.0014217	843.374714279736	0.52265	0.19871	0.52265	0.40378	0.60249	0					16	5	4	0	0	0	0.011617	1	92	3.6449	3.6449	1	36340		+	12	1	9	9	14	14
YICDNQDTISSK	12	Unmodified	_YICDNQDTISSK_			0	0	0	bsa;CON__P02769	bsa	bsa	MSMS	BSA_min_21	722.326232910156	2	722.324656	1442.63476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.25827	1	0.25827	-0.24173	0.75827	0								0	0	0	4.413E-09	1	44	24.343	7.7115	1			+	13	2	10	10	15	15