# HG changeset patch
# User galaxyp
# Date 1710767224 0
# Node ID 9c52362ae7bba5129cc198c8b3b66d9219d2c441
# Parent  8934bc76bb5238bfc6df0bc2fc671dc03f09128b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit c810d2eaedfcad1edf1a84cab8296dcd7b35f5bc

diff -r 8934bc76bb52 -r 9c52362ae7bb macros.xml
--- a/macros.xml	Mon Jun 19 17:02:17 2023 +0000
+++ b/macros.xml	Mon Mar 18 13:07:04 2024 +0000
@@ -88,6 +88,11 @@
                     - [iodoTMT6plex-Cys130,'',0,0,0,0,True]
                     - [iodoTMT6plex-Cys131,'',0,0,0,0,True]
     </token>
+    <xml name="xrefs">
+        <xrefs>
+            <xref type="bio.tools">maxquant</xref>
+        </xrefs>
+    </xml>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@VERSION@">maxquant</requirement>
@@ -910,8 +915,7 @@
                     <param name="cp1" type="float" label="correction factor +1%" value="0.0"/>
                     <param name="cp2" type="float" label="correction factor +2%" value="0.0"/>
                     <param type="boolean" name="tmtlike" checked="false"
-                           label="TMT-like"
-                           truevalue="True" falsevalue="False"/>
+                           label="TMT-like" truevalue="true" falsevalue="false"/>
                 </repeat>
             </when>
         </conditional>
diff -r 8934bc76bb52 -r 9c52362ae7bb maxquant.xml
--- a/maxquant.xml	Mon Jun 19 17:02:17 2023 +0000
+++ b/maxquant.xml	Mon Mar 18 13:07:04 2024 +0000
@@ -2,6 +2,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="xrefs"/>
     <expand macro="requirements"/>
     <expand macro="required_files"/>
     <command detect_errors="exit_code"><![CDATA[
diff -r 8934bc76bb52 -r 9c52362ae7bb maxquant_mqpar.xml
--- a/maxquant_mqpar.xml	Mon Jun 19 17:02:17 2023 +0000
+++ b/maxquant_mqpar.xml	Mon Mar 18 13:07:04 2024 +0000
@@ -2,6 +2,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="xrefs"/>
     <expand macro="requirements"/>
     <expand macro="required_files"/>
     <command detect_errors="exit_code"><![CDATA[
@@ -131,7 +132,7 @@
     <expand macro="outputs"/>
 
     <tests>
-        <test>
+        <test expect_num_outputs="19">
             <param name="ftype" value=".mzxml" />
             <param name="infiles" value="BSA_min_22,BSA_min_21.mzXML" />
             <param name="fasta_files" value="bsa.fasta" />