annotate test-data/two/combined/txt/modificationSpecificPeptides.txt @ 2:3fc2116ac6d9 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 74b5aa29e49deaaebe19ce2355a70d4f570f4951"

Sequence	Modifications	Mass	Mass Fractional Part	Protein Groups	Proteins	Unique (Groups)	Unique (Proteins)	Oxidation (M)	Missed cleavages	Fraction Average	Fraction Std. Dev.	Fraction 1	Fraction 2	Experiment BSA_min_21.mzXML	Experiment BSA_min_22.mzXML	Retention time	Calibrated retention time	Charges	PEP	MS/MS scan number	Raw file	Score	Delta score	Intensity	Intensity BSA_min_21.mzXML	Intensity BSA_min_22.mzXML	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	MS/MS Count
DDPHACYSTVFDK	Unmodified	1553.6457	0.64565776	0	CON__P02769;bsa	yes	no	0	0	1	0	1		1		0.47149	0.47149	2	0.0087938	82	BSA_min_21	0	0	32419	32419	0		+	0	0	0	0	0	0		1
ECCHGDLLECADDR	Unmodified	1748.6553	0.65525294	0	CON__P02769;bsa	yes	no	0	0	2	0		2		2	0.46522	0.46522	2;3	0.012255	60	BSA_min_22	4.06	4.06	485350	0	485350		+	1	0	1	1;2	1;2;3	1		3
GCTTTNSPSTPCQNCSR	Unmodified	1926.7618	0.76184328	4	CON__Q6IFU6	yes	yes	0	0	1	0	1		1		0.26375	0.26375	2	0.016011	45	BSA_min_21	0	0	0	0	0		+	2	4	2	3	4	4		1
LGQYTSPVAK	Unmodified	1062.571	0.5709599	1	CON__P01030;CON__ENSEMBL:ENSBTAP00000007350	yes	no	0	0	1	0	1		1		0.057288	0.057288	2	0.0074222	10	BSA_min_21	9.2141	9.2141	0	0	0		+	3	1	3	4	5	5		1
TSDANINWNNLK	Unmodified	1388.6684	0.66844211	3	CON__Q29443;CON__Q0IIK2	yes	no	0	0	1	0	2		2		0.41393	0.41393	2;3	0.0053592	98	BSA_min_21	2.8669	2.8669	137580	137580	0		+	4	3	4	5;6	6;7;8	7		3
YCGVPGEYWLGNDR	Unmodified	1684.7304	0.73039044	2	CON__P02676	yes	yes	0	0	1	0	2		2		0.51128	0.51128	2;3	0.012255	80	BSA_min_21	0	0	114330	114330	0		+	5	2	5	7;8	9;10	9		2
YICDNQDTISSK	Unmodified	1442.6348	0.63475872	0	CON__P02769;bsa	yes	no	0	0	1	0	1		1		0.25827	0.25827	2	3.6003E-09	44	BSA_min_21	24.343	7.7115	0	0	0		+	6	0	6	9	11	11		1