annotate test-data/txt/evidence.txt @ 4:9cb7dcc07dae draft default tip

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 5e4f8567c0145de8c6f9344fe4ee4c3bf2a81e59"

Sequence	Length	Modifications	Modified sequence	Oxidation (M) Probabilities	Oxidation (M) Score Diffs	Acetyl (Protein N-term)	Oxidation (M)	Missed cleavages	Proteins	Leading proteins	Leading razor protein	Type	Raw file	MS/MS m/z	Charge	m/z	Mass	Resolution	Uncalibrated - Calibrated m/z [ppm]	Uncalibrated - Calibrated m/z [Da]	Mass error [ppm]	Mass error [Da]	Uncalibrated mass error [ppm]	Uncalibrated mass error [Da]	Max intensity m/z 0	Retention time	Retention length	Calibrated retention time	Calibrated retention time start	Calibrated retention time finish	Retention time calibration	Match time difference	Match m/z difference	Match q-value	Match score	Number of data points	Number of scans	Number of isotopic peaks	PIF	Fraction of total spectrum	Base peak fraction	PEP	MS/MS count	MS/MS scan number	Score	Delta score	Combinatorics	Intensity	Reporter PIF	Reporter fraction	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Mod. peptide ID	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs
AEFVEVTK	8	Unmodified	_AEFVEVTK_			0	0	0	CON__P02769;bsa	CON__P02769	CON__P02769	MULTI-SECPEP	BSA_min_21	461.747985839844	2	461.74765	921.480748	NaN	0	0	0.05159	2.3822E-05	0.05159	2.3822E-05	461.747684636513	0.52947	0.23399	0.52947	0.3685	0.60249	0					14	6	3	0	0	0	0.010981	1	85	3.3922	3.3922	1	43020				+	0	0	0	0	0	0	
DDPHACYSTVFDK	13	Unmodified	_DDPHACYSTVFDK_			0	0	0	CON__P02769;bsa	CON__P02769	CON__P02769	MULTI-MSMS	BSA_min_21	777.835021972656	2	777.830105	1553.64566	NaN	0	0	0.83472	0.00064927	0.83472	0.00064927	777.830735936543	0.47149	0.26748	0.47149	0.29786	0.56534	0					10	7	2	0	0	0	0.0081868	1	82	0	0	1	32419				+	1	0	1	1	1	1	
ECCHGDLLECADDR	14	Unmodified	_ECCHGDLLECADDR_			0	0	0	CON__P02769;bsa	CON__P02769	CON__P02769	MULTI-MSMS	BSA_min_22	584.229736328125	3	583.892361	1748.65525	NaN	0	0	-1.2	-0.00070066	-1.2	-0.00070066	583.891878608632	0.42243	0.40142	0.42243	0.19137	0.59279	0					52	16	4	0	0	0	0.011617	2	60	4.06	4.06	1	339840				+	2	0	2	2	2;3	2	
ECCHGDLLECADDR	14	Unmodified	_ECCHGDLLECADDR_			0	0	0	CON__P02769;bsa	CON__P02769	CON__P02769	MULTI-MSMS	BSA_min_22	875.332336425781	2	875.334903	1748.65525	NaN	0	0	0.26945	0.00023586	0.26945	0.00023586	875.335151892134	0.508	0.18103	0.508	0.41176	0.59279	0					16	8	3	0	0	0	0.011617	1	90	3.6449	3.6449	1	145520				+	3	0	2	2	4	4	
FNETTEK	7	Unmodified	_FNETTEK_			0	0	0	CON__REFSEQ:XP_585019	CON__REFSEQ:XP_585019	CON__REFSEQ:XP_585019	MULTI-SECPEP	BSA_min_21	868.867431640625	1	868.404689	867.397412	NaN	0	0	1.5658	0.0013597	1.5658	0.0013597	868.405948529351	0.54676	0.26937	0.54676	0.33312	0.60249	0					14	7	2	0	0	0	0.0062991	1	57	0	0	1	40514				+	4	8	3	3	5	5	
GCTTTNSPSTPCQNCSR	17	Unmodified	_GCTTTNSPSTPCQNCSR_			0	0	0	CON__Q6IFU6	CON__Q6IFU6	CON__Q6IFU6	MSMS	BSA_min_21	964.384521484375	2	964.388198	1926.76184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.26375	1	0.26375	-0.23625	0.76375	0								0	0	0	0.016056	1	45	0	0	1					+	5	7	4	4	6	6	
GETGPAGPSGAPGPAGSR	18	Unmodified	_GETGPAGPSGAPGPAGSR_			0	0	0	CON__P04258	CON__P04258	CON__P04258	MSMS	BSA_min_21	508.24755859375	3	508.246338	1521.71718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.091825	1	0.091825	-0.40818	0.59183	0								0	0	0	0.014811	1	16	0	0	1					+	6	4	5	5	7	7	
LGQYTSPVAK	10	Unmodified	_LGQYTSPVAK_			0	0	0	CON__P01030;CON__ENSEMBL:ENSBTAP00000007350	CON__P01030	CON__P01030	MSMS	BSA_min_21	532.293029785156	2	532.292756	1062.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.057288	1	0.057288	-0.44271	0.55729	6.9389E-18								0	0	0	0.0086806	1	10	9.2141	9.2141	1					+	7	1	6	6	8	8	
TSDANINWNNLK	12	Unmodified	_TSDANINWNNLK_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443	MULTI-MSMS	BSA_min_21	463.896636962891	3	463.896757	1388.66844	NaN	0	0	0.2251	0.00010442	0.2251	0.00010442	463.896829521798	0.42161	0.33709	0.42161	0.2654	0.60249	0					18	9	3	0	0	0	0.0052683	2	67	2.8669	2.8669	1	99326				+	8	6	7	7	9;10	9	
TSDANINWNNLK	12	Unmodified	_TSDANINWNNLK_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443	MULTI-MSMS	BSA_min_21	695.341064453125	2	695.341498	1388.66844	NaN	0	0	1.6082	0.0011183	1.6082	0.0011183	695.342847214244	0.40624	0.23684	0.40624	0.29786	0.5347	-5.5511E-17					11	6	2	0	0	0	0.0052683	1	70	0	0	1	38250				+	9	6	7	7	11	11	
VLDQYIFELSR	11	Unmodified	_VLDQYIFELSR_			0	0	0	CON__Q3MHN5;CON__ENSEMBL:ENSBTAP00000018229	CON__Q3MHN5	CON__Q3MHN5	MULTI-SECPEP	BSA_min_22	692.368225097656	2	691.86936	1381.72417	NaN	0	0	3.4987	0.0024207	3.4987	0.0024207	691.872041785377	0.50384	0.436	0.50384	0.15679	0.59279	0					27	17	2	0	0	0	0.01812	1	48	0	0	1	89423				+	10	2	8	8	12	12	
VLYDAEISQIHQSVTDTNVILSMDNSR	27	Unmodified	_VLYDAEISQIHQSVTDTNVILSMDNSR_			0	0	0	CON__P35908v2;CON__P35908	CON__P35908v2	CON__P35908v2	MULTI-SECPEP	BSA_min_21	508.586730957031	6	508.921773	3047.48698	NaN	0	0	-0.028189	-1.4346E-05	-0.028189	-1.4346E-05	509.256120722166	0.35628	0.17335	0.35628	0.2654	0.43874	0					6	4	2	0	0	0	0.0020659	1	73	0	0	1	26948				+	11	5	9	9	13	13	
YCGVPGEYWLGNDR	14	Unmodified	_YCGVPGEYWLGNDR_			0	0	0	CON__P02676	CON__P02676	CON__P02676	MULTI-MSMS	BSA_min_21	562.586242675781	3	562.584073	1684.73039	NaN	0	0	-0.095012	-5.3452E-05	-0.095012	-5.3452E-05	562.584772670959	0.49991	0.26937	0.49991	0.33312	0.60249	0					23	7	4	0	0	0	0.011617	1	80	0	0	1	78017				+	12	3	10	10	14	14	
YCGVPGEYWLGNDR	14	Unmodified	_YCGVPGEYWLGNDR_			0	0	0	CON__P02676	CON__P02676	CON__P02676	MULTI-MSMS	BSA_min_21	843.877807617188	2	843.372472	1684.73039	NaN	0	0	1.6852	0.0014212	1.6852	0.0014212	843.374714279736	0.52265	0.19871	0.52265	0.40378	0.60249	0					16	5	4	0	0	0	0.011617	1	92	3.6449	3.6449	1	36308				+	13	3	10	10	15	15	
YICDNQDTISSK	12	Unmodified	_YICDNQDTISSK_			0	0	0	CON__P02769;bsa	CON__P02769	CON__P02769	MSMS	BSA_min_21	722.326232910156	2	722.324656	1442.63476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.25827	1	0.25827	-0.24173	0.75827	0								0	0	0	4.413E-09	1	44	24.343	7.7115	1					+	14	0	11	11	16	16