Mercurial > repos > galaxyp > maxquant_mqpar
comparison README.md @ 0:256cc0e17454 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit ab4e4f1817080cbe8a031a82cb180610ff140847
| author | galaxyp |
|---|---|
| date | Sat, 20 Jul 2019 04:53:23 -0400 |
| parents | |
| children | 2d67fb758956 |
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| 1 GalaxyP - MaxQuant | |
| 2 ================== | |
| 3 | |
| 4 * Home: <https://github.com/galaxyproteomics/tools-galaxyp/> | |
| 5 * Tool ID: `maxquant_mqpar` | |
| 6 * Tool Type: `default` | |
| 7 | |
| 8 | |
| 9 Description | |
| 10 ----------- | |
| 11 | |
| 12 Wrapper for the MaxQuant version available in conda. | |
| 13 | |
| 14 | |
| 15 Updating | |
| 16 -------- | |
| 17 | |
| 18 MaxQuant often changes the layout of its parameters file. | |
| 19 So changes to the code are likely to be necessary when | |
| 20 updating to a new version of MaxQuant. The init.py script | |
| 21 can be used to initialize the tool with a new list of | |
| 22 modifications or enzymes. From the tool dir run: | |
| 23 | |
| 24 ./init.py -m MODIFICATIONS.XML -e ENZYMES.XML | |
| 25 | |
| 26 The location of these xml files usually is: | |
| 27 ANACONDA_DIR/bin/conf/ |