Mercurial > repos > galaxyp > maxquant_mqpar

comparison test-data/two/combined/txt/evidence.txt @ 0:256cc0e17454 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit ab4e4f1817080cbe8a031a82cb180610ff140847
author galaxyp
date Sat, 20 Jul 2019 04:53:23 -0400
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-1:000000000000 0:256cc0e17454
1 Sequence Length Modifications Modified sequence Oxidation (M) Probabilities Oxidation (M) Score Diffs Oxidation (M) Missed cleavages Proteins Leading proteins Leading razor protein Type Raw file Fraction Experiment MS/MS m/z Charge m/z Mass Resolution Uncalibrated - Calibrated m/z [ppm] Uncalibrated - Calibrated m/z [Da] Mass error [ppm] Mass error [Da] Uncalibrated mass error [ppm] Uncalibrated mass error [Da] Max intensity m/z 0 Retention time Retention length Calibrated retention time Calibrated retention time start Calibrated retention time finish Retention time calibration Match time difference Match m/z difference Match q-value Match score Number of data points Number of scans Number of isotopic peaks PIF Fraction of total spectrum Base peak fraction PEP MS/MS count MS/MS scan number Score Delta score Combinatorics Intensity Reverse Potential contaminant id Protein group IDs Peptide ID Mod. peptide ID MS/MS IDs Best MS/MS AIF MS/MS IDs Oxidation (M) site IDs
2 DDPHACYSTVFDK 13 Unmodified _DDPHACYSTVFDK_ 0 0 CON__P02769;bsa CON__P02769 CON__P02769 MULTI-MSMS BSA_min_21 1 BSA_min_21.mzXML 777.835021972656 2 777.830105 1553.64566 NaN 0 0 0.83472 0.00064927 0.83472 0.00064927 777.830735936543 0.47149 0.26748 0.47149 0.29786 0.56534 0 10 7 2 0 0 0 0.0087938 1 82 0 0 1 32419 + 0 0 0 0 0 0
3 ECCHGDLLECADDR 14 Unmodified _ECCHGDLLECADDR_ 0 0 CON__P02769;bsa CON__P02769 CON__P02769 MULTI-MSMS BSA_min_22 2 BSA_min_22.mzXML 584.229736328125 3 583.892361 1748.65525 NaN 0 0 -1.2 -0.00070066 -1.2 -0.00070066 583.891878608632 0.42243 0.40142 0.42243 0.19137 0.59279 0 52 16 4 0 0 0 0.012255 2 60 4.06 4.06 1 339840 + 1 0 1 1 1;2 1
4 ECCHGDLLECADDR 14 Unmodified _ECCHGDLLECADDR_ 0 0 CON__P02769;bsa CON__P02769 CON__P02769 MULTI-MSMS BSA_min_22 2 BSA_min_22.mzXML 875.332336425781 2 875.334903 1748.65525 NaN 0 0 0.26945 0.00023586 0.26945 0.00023586 875.335151892134 0.508 0.18103 0.508 0.41176 0.59279 0 16 8 3 0 0 0 0.012255 1 90 3.6449 3.6449 1 145520 + 2 0 1 1 3 3
5 GCTTTNSPSTPCQNCSR 17 Unmodified _GCTTTNSPSTPCQNCSR_ 0 0 CON__Q6IFU6 CON__Q6IFU6 CON__Q6IFU6 MSMS BSA_min_21 1 BSA_min_21.mzXML 964.384521484375 2 964.388198 1926.76184 NaN NaN NaN NaN NaN NaN NaN NaN 0.26375 1 0.26375 -0.23625 0.76375 0 0 0 0 0.016011 1 45 0 0 1 + 3 4 2 2 4 4
6 LGQYTSPVAK 10 Unmodified _LGQYTSPVAK_ 0 0 CON__P01030;CON__ENSEMBL:ENSBTAP00000007350 CON__P01030 CON__P01030 MSMS BSA_min_21 1 BSA_min_21.mzXML 532.293029785156 2 532.292756 1062.57096 NaN NaN NaN NaN NaN NaN NaN NaN 0.057288 1 0.057288 -0.44271 0.55729 6.9389E-18 0 0 0 0.0074222 1 10 9.2141 9.2141 1 + 4 1 3 3 5 5
7 TSDANINWNNLK 12 Unmodified _TSDANINWNNLK_ 0 0 CON__Q29443;CON__Q0IIK2 CON__Q29443 CON__Q29443 MULTI-MSMS BSA_min_21 1 BSA_min_21.mzXML 463.896636962891 3 463.896757 1388.66844 NaN 0 0 0.2251 0.00010442 0.2251 0.00010442 463.896829521798 0.42161 0.33709 0.42161 0.2654 0.60249 0 18 9 3 0 0 0 0.0053592 2 67 2.8669 2.8669 1 99326 + 5 3 4 4 6;7 6
8 TSDANINWNNLK 12 Unmodified _TSDANINWNNLK_ 0 0 CON__Q29443;CON__Q0IIK2 CON__Q29443 CON__Q29443 MULTI-MSMS BSA_min_21 1 BSA_min_21.mzXML 695.341064453125 2 695.341498 1388.66844 NaN 0 0 1.6082 0.0011183 1.6082 0.0011183 695.342847214244 0.40624 0.23684 0.40624 0.29786 0.5347 -5.5511E-17 11 6 2 0 0 0 0.0053592 1 70 0 0 1 38250 + 6 3 4 4 8 8
9 YCGVPGEYWLGNDR 14 Unmodified _YCGVPGEYWLGNDR_ 0 0 CON__P02676 CON__P02676 CON__P02676 MULTI-MSMS BSA_min_21 1 BSA_min_21.mzXML 562.586242675781 3 562.584073 1684.73039 NaN 0 0 -0.095012 -5.3452E-05 -0.095012 -5.3452E-05 562.584772670959 0.49991 0.26937 0.49991 0.33312 0.60249 0 23 7 4 0 0 0 0.012255 1 80 0 0 1 78017 + 7 2 5 5 9 9
10 YCGVPGEYWLGNDR 14 Unmodified _YCGVPGEYWLGNDR_ 0 0 CON__P02676 CON__P02676 CON__P02676 MULTI-MSMS BSA_min_21 1 BSA_min_21.mzXML 843.877807617188 2 843.372472 1684.73039 NaN 0 0 1.6852 0.0014212 1.6852 0.0014212 843.374714279736 0.52265 0.19871 0.52265 0.40378 0.60249 0 16 5 4 0 0 0 0.012255 1 92 3.6449 3.6449 1 36308 + 8 2 5 5 10 10
11 YICDNQDTISSK 12 Unmodified _YICDNQDTISSK_ 0 0 CON__P02769;bsa CON__P02769 CON__P02769 MSMS BSA_min_21 1 BSA_min_21.mzXML 722.326232910156 2 722.324656 1442.63476 NaN NaN NaN NaN NaN NaN NaN NaN 0.25827 1 0.25827 -0.24173 0.75827 0 0 0 0 3.6003E-09 1 44 24.343 7.7115 1 + 9 0 6 6 11 11