Mercurial > repos > galaxyp > maxquant_mqpar
comparison mqwrapper.py @ 1:26693e21c3c8 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 2131f017e9303599ed672797ffd6e9b00ab1245d
| author | galaxyp |
|---|---|
| date | Wed, 07 Aug 2019 10:50:29 -0400 |
| parents | 256cc0e17454 |
| children |
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| 0:256cc0e17454 | 1:26693e21c3c8 |
|---|---|
| 54 fnames_with_ext = [(a if a.endswith(ftype) | 54 fnames_with_ext = [(a if a.endswith(ftype) |
| 55 else os.path.splitext(a)[0] + ftype) | 55 else os.path.splitext(a)[0] + ftype) |
| 56 for a in filenames] | 56 for a in filenames] |
| 57 | 57 |
| 58 for f, l in zip(files, fnames_with_ext): | 58 for f, l in zip(files, fnames_with_ext): |
| 59 os.link(f, l) | 59 os.symlink(f, l) |
| 60 | 60 |
| 61 # build mqpar.xml | 61 # build mqpar.xml |
| 62 mqpar_temp = os.path.join(os.getcwd(), 'mqpar.xml') | 62 mqpar_temp = os.path.join(os.getcwd(), 'mqpar.xml') |
| 63 mqpar_out = args['mqpar_out'] if args['mqpar_out'] != 'None' else mqpar_temp | 63 mqpar_out = args['mqpar_out'] if args['mqpar_out'] != 'None' else mqpar_temp |
| 64 mqpar_in = args['mqpar_in'] | 64 mqpar_in = args['mqpar_in'] |