diff test-data/two/combined/txt/peptides.txt @ 0:256cc0e17454 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit ab4e4f1817080cbe8a031a82cb180610ff140847

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/two/combined/txt/peptides.txt	Sat Jul 20 04:53:23 2019 -0400
@@ -0,0 +1,8 @@
+Sequence	N-term cleavage window	C-term cleavage window	Amino acid before	First amino acid	Second amino acid	Second last amino acid	Last amino acid	Amino acid after	A Count	R Count	N Count	D Count	C Count	Q Count	E Count	G Count	H Count	I Count	L Count	K Count	M Count	F Count	P Count	S Count	T Count	W Count	Y Count	V Count	U Count	O Count	Length	Missed cleavages	Mass	Proteins	Leading razor protein	Start position	End position	Unique (Groups)	Unique (Proteins)	Charges	PEP	Score	Fraction Average	Fraction Std. Dev.	Fraction 1	Fraction 2	Experiment BSA_min_21.mzXML	Experiment BSA_min_22.mzXML	Intensity	Intensity BSA_min_21.mzXML	Intensity BSA_min_22.mzXML	Reverse	Potential contaminant	id	Protein group IDs	Mod. peptide IDs	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	MS/MS Count
+DDPHACYSTVFDK	LAKEYEATLEECCAKDDPHACYSTVFDKLK	AKDDPHACYSTVFDKLKHLVDEPQNLIKQN	K	D	D	D	K	L	1	0	0	3	1	0	0	0	1	0	0	1	0	1	1	1	1	0	1	1	0	0	13	0	1553.6457	CON__P02769;bsa	CON__P02769	387	399	yes	no	2	0.0087938	0	1	0	1		1		32419	32419	0		+	0	0	0	0	0	0		1
+ECCHGDLLECADDR	VEVTKLVTDLTKVHKECCHGDLLECADDRA	KECCHGDLLECADDRADLAKYICDNQDTIS	K	E	C	D	R	A	1	1	0	3	3	0	2	1	1	0	2	0	0	0	0	0	0	0	0	0	0	0	14	0	1748.6553	CON__P02769;bsa	CON__P02769	267	280	yes	no	2;3	0.012255	4.06	2	0		2		2	485350	0	485350		+	1	0	1	1;2	1;2;3	1		3
+GCTTTNSPSTPCQNCSR	______________________________	TTTNSPSTPCQNCSRITNVSTISSNNGCHP	K	G	C	S	R	I	0	1	2	0	3	1	0	1	0	0	0	0	0	0	2	3	4	0	0	0	0	0	17	0	1926.7618	CON__Q6IFU6	CON__Q6IFU6	5	21	yes	yes	2	0.016011	0	1	0	1		1		0	0	0		+	2	4	2	3	4	4		1
+LGQYTSPVAK	RKKRNVNFQKAIHEKLGQYTSPVAKRCCQD	AIHEKLGQYTSPVAKRCCQDGLTRLPMART	K	L	G	A	K	R	1	0	0	0	0	1	0	1	0	0	1	1	0	0	1	1	1	0	1	1	0	0	10	0	1062.571	CON__P01030;CON__ENSEMBL:ENSBTAP00000007350	CON__P01030	689	698	yes	no	2	0.0074222	9.2141	1	0	1		1		0	0	0		+	3	1	3	4	5	5		1
+TSDANINWNNLK	KNTPEKGYLAVAVVKTSDANINWNNLKDKK	VVKTSDANINWNNLKDKKSCHTAVDRTAGW	K	T	S	L	K	D	1	0	4	1	0	0	0	0	0	1	1	1	0	0	0	1	1	1	0	0	0	0	12	0	1388.6684	CON__Q29443;CON__Q0IIK2	CON__Q29443	438	449	yes	no	2;3	0.0053592	2.8669	1	0	2		2		137580	137580	0		+	4	3	4	5;6	6;7;8	6		3
+YCGVPGEYWLGNDR	KQGFGNIATNAEGKKYCGVPGEYWLGNDRI	KYCGVPGEYWLGNDRISQLTNMGPTKLLIE	K	Y	C	D	R	I	0	1	1	1	1	0	1	3	0	0	1	0	0	0	1	0	0	1	2	1	0	0	14	0	1684.7304	CON__P02676	CON__P02676	319	332	yes	yes	2;3	0.012255	3.6449	1	0	2		2		114330	114330	0		+	5	2	5	7;8	9;10	9		2
+YICDNQDTISSK	GDLLECADDRADLAKYICDNQDTISSKLKE	LAKYICDNQDTISSKLKECCDKPLLEKSHC	K	Y	I	S	K	L	0	0	1	2	1	1	0	0	0	2	0	1	0	0	0	2	1	0	1	0	0	0	12	0	1442.6348	CON__P02769;bsa	CON__P02769	286	297	yes	no	2	3.6003E-09	24.343	1	0	1		1		0	0	0		+	6	0	6	9	11	11		1