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view test-data/two/combined/txt/evidence.txt @ 0:256cc0e17454 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit ab4e4f1817080cbe8a031a82cb180610ff140847
author galaxyp
date Sat, 20 Jul 2019 04:53:23 -0400
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Sequence	Length	Modifications	Modified sequence	Oxidation (M) Probabilities	Oxidation (M) Score Diffs	Oxidation (M)	Missed cleavages	Proteins	Leading proteins	Leading razor protein	Type	Raw file	Fraction	Experiment	MS/MS m/z	Charge	m/z	Mass	Resolution	Uncalibrated - Calibrated m/z [ppm]	Uncalibrated - Calibrated m/z [Da]	Mass error [ppm]	Mass error [Da]	Uncalibrated mass error [ppm]	Uncalibrated mass error [Da]	Max intensity m/z 0	Retention time	Retention length	Calibrated retention time	Calibrated retention time start	Calibrated retention time finish	Retention time calibration	Match time difference	Match m/z difference	Match q-value	Match score	Number of data points	Number of scans	Number of isotopic peaks	PIF	Fraction of total spectrum	Base peak fraction	PEP	MS/MS count	MS/MS scan number	Score	Delta score	Combinatorics	Intensity	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Mod. peptide ID	MS/MS IDs	Best MS/MS	AIF MS/MS IDs	Oxidation (M) site IDs
DDPHACYSTVFDK	13	Unmodified	_DDPHACYSTVFDK_			0	0	CON__P02769;bsa	CON__P02769	CON__P02769	MULTI-MSMS	BSA_min_21	1	BSA_min_21.mzXML	777.835021972656	2	777.830105	1553.64566	NaN	0	0	0.83472	0.00064927	0.83472	0.00064927	777.830735936543	0.47149	0.26748	0.47149	0.29786	0.56534	0					10	7	2	0	0	0	0.0087938	1	82	0	0	1	32419		+	0	0	0	0	0	0		
ECCHGDLLECADDR	14	Unmodified	_ECCHGDLLECADDR_			0	0	CON__P02769;bsa	CON__P02769	CON__P02769	MULTI-MSMS	BSA_min_22	2	BSA_min_22.mzXML	584.229736328125	3	583.892361	1748.65525	NaN	0	0	-1.2	-0.00070066	-1.2	-0.00070066	583.891878608632	0.42243	0.40142	0.42243	0.19137	0.59279	0					52	16	4	0	0	0	0.012255	2	60	4.06	4.06	1	339840		+	1	0	1	1	1;2	1		
ECCHGDLLECADDR	14	Unmodified	_ECCHGDLLECADDR_			0	0	CON__P02769;bsa	CON__P02769	CON__P02769	MULTI-MSMS	BSA_min_22	2	BSA_min_22.mzXML	875.332336425781	2	875.334903	1748.65525	NaN	0	0	0.26945	0.00023586	0.26945	0.00023586	875.335151892134	0.508	0.18103	0.508	0.41176	0.59279	0					16	8	3	0	0	0	0.012255	1	90	3.6449	3.6449	1	145520		+	2	0	1	1	3	3		
GCTTTNSPSTPCQNCSR	17	Unmodified	_GCTTTNSPSTPCQNCSR_			0	0	CON__Q6IFU6	CON__Q6IFU6	CON__Q6IFU6	MSMS	BSA_min_21	1	BSA_min_21.mzXML	964.384521484375	2	964.388198	1926.76184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.26375	1	0.26375	-0.23625	0.76375	0								0	0	0	0.016011	1	45	0	0	1			+	3	4	2	2	4	4		
LGQYTSPVAK	10	Unmodified	_LGQYTSPVAK_			0	0	CON__P01030;CON__ENSEMBL:ENSBTAP00000007350	CON__P01030	CON__P01030	MSMS	BSA_min_21	1	BSA_min_21.mzXML	532.293029785156	2	532.292756	1062.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.057288	1	0.057288	-0.44271	0.55729	6.9389E-18								0	0	0	0.0074222	1	10	9.2141	9.2141	1			+	4	1	3	3	5	5		
TSDANINWNNLK	12	Unmodified	_TSDANINWNNLK_			0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443	MULTI-MSMS	BSA_min_21	1	BSA_min_21.mzXML	463.896636962891	3	463.896757	1388.66844	NaN	0	0	0.2251	0.00010442	0.2251	0.00010442	463.896829521798	0.42161	0.33709	0.42161	0.2654	0.60249	0					18	9	3	0	0	0	0.0053592	2	67	2.8669	2.8669	1	99326		+	5	3	4	4	6;7	6		
TSDANINWNNLK	12	Unmodified	_TSDANINWNNLK_			0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443	MULTI-MSMS	BSA_min_21	1	BSA_min_21.mzXML	695.341064453125	2	695.341498	1388.66844	NaN	0	0	1.6082	0.0011183	1.6082	0.0011183	695.342847214244	0.40624	0.23684	0.40624	0.29786	0.5347	-5.5511E-17					11	6	2	0	0	0	0.0053592	1	70	0	0	1	38250		+	6	3	4	4	8	8		
YCGVPGEYWLGNDR	14	Unmodified	_YCGVPGEYWLGNDR_			0	0	CON__P02676	CON__P02676	CON__P02676	MULTI-MSMS	BSA_min_21	1	BSA_min_21.mzXML	562.586242675781	3	562.584073	1684.73039	NaN	0	0	-0.095012	-5.3452E-05	-0.095012	-5.3452E-05	562.584772670959	0.49991	0.26937	0.49991	0.33312	0.60249	0					23	7	4	0	0	0	0.012255	1	80	0	0	1	78017		+	7	2	5	5	9	9		
YCGVPGEYWLGNDR	14	Unmodified	_YCGVPGEYWLGNDR_			0	0	CON__P02676	CON__P02676	CON__P02676	MULTI-MSMS	BSA_min_21	1	BSA_min_21.mzXML	843.877807617188	2	843.372472	1684.73039	NaN	0	0	1.6852	0.0014212	1.6852	0.0014212	843.374714279736	0.52265	0.19871	0.52265	0.40378	0.60249	0					16	5	4	0	0	0	0.012255	1	92	3.6449	3.6449	1	36308		+	8	2	5	5	10	10		
YICDNQDTISSK	12	Unmodified	_YICDNQDTISSK_			0	0	CON__P02769;bsa	CON__P02769	CON__P02769	MSMS	BSA_min_21	1	BSA_min_21.mzXML	722.326232910156	2	722.324656	1442.63476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.25827	1	0.25827	-0.24173	0.75827	0								0	0	0	3.6003E-09	1	44	24.343	7.7115	1			+	9	0	6	6	11	11