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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 2131f017e9303599ed672797ffd6e9b00ab1245d
author galaxyp
date Wed, 07 Aug 2019 10:50:29 -0400
parents 256cc0e17454
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GalaxyP - MaxQuant
==================

* Home: <https://github.com/galaxyproteomics/tools-galaxyp/>
* Tool ID: `maxquant_mqpar`
* Tool Type: `default`


Description
-----------

Wrapper for the MaxQuant version available in conda.


Updating
--------

MaxQuant often changes the layout of its parameters file.
So changes to the code are likely to be necessary when
updating to a new version of MaxQuant. The init.py script
can be used to initialize the tool with a new list of
modifications or enzymes. From the tool dir run:

./init.py -m MODIFICATIONS.XML -e ENZYMES.XML

The location of these xml files usually is:
ANACONDA_DIR/bin/conf/