view test-data/two/combined/txt/summary.txt @ 2:3fc2116ac6d9 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 74b5aa29e49deaaebe19ce2355a70d4f570f4951"

Raw file	Experiment	Fraction	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Fixed modifications	Multi modifications	Variable modifications first search	Use variable modifications first search	Requantify	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS3	MS/MS Submitted	MS/MS Submitted (SIL)	MS/MS Submitted (ISO)	MS/MS Submitted (PEAK)	MS/MS Identified	MS/MS Identified (SIL)	MS/MS Identified (ISO)	MS/MS Identified (PEAK)	MS/MS Identified [%]	MS/MS Identified (SIL) [%]	MS/MS Identified (ISO) [%]	MS/MS Identified (PEAK) [%]	Peptide Sequences Identified	Peaks	Peaks Sequenced	Peaks Sequenced [%]	Peaks Repeatedly Sequenced	Peaks Repeatedly Sequenced [%]	Isotope Patterns	Isotope Patterns Sequenced	Isotope Patterns Sequenced (z>1)	Isotope Patterns Sequenced [%]	Isotope Patterns Sequenced (z>1) [%]	Isotope Patterns Repeatedly Sequenced	Isotope Patterns Repeatedly Sequenced [%]	Recalibrated	Av. Absolute Mass Deviation [ppm]	Mass Standard Deviation [ppm]	Av. Absolute Mass Deviation [mDa]	Mass Standard Deviation [mDa]
BSA_min_21	BSA_min_21.mzXML	1	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	0		Standard		18	82	0	125	39	0	86	9	6	0	3	7.2	15.38	NaN	3.49	6	1031	56	5.43	1	1.79	112	33	32	29.46	34.41	6	18.18	+	0.89087	1.1135	0.66933	0.8609
BSA_min_22	BSA_min_22.mzXML	2	Trypsin/P	Specific			False	Oxidation (M)	Carbamidomethyl (C)			False	False	1	0		Standard		23	77	0	101	53	0	48	3	3	0	0	2.97	5.66	NaN	0	1	1675	61	3.64	1	1.64	295	43	41	14.58	15.24	10	23.26	+	0.73591	0.87113	0.46826	0.52276
Total																			41	159	0	226	92	0	134	12	9	0	3	5.31	9.78	NaN	2.24	7	2706					407	76	73	18.67	20.17	16	21.05		0.84659	1.05	0.61188	0.77941