Mercurial > repos > galaxyp > maxquant_mqpar
changeset 2:3fc2116ac6d9 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 74b5aa29e49deaaebe19ce2355a70d4f570f4951"
| author | galaxyp |
|---|---|
| date | Thu, 15 Aug 2019 08:09:38 -0400 |
| parents | 26693e21c3c8 |
| children | 2d67fb758956 |
| files | init.py maxquant_mqpar.xml |
| diffstat | 2 files changed, 3 insertions(+), 5 deletions(-) [+] |
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--- a/init.py Wed Aug 07 10:50:29 2019 -0400 +++ b/init.py Thu Aug 15 08:09:38 2019 -0400 @@ -45,8 +45,7 @@ standard_mods = [] label_mods = [] for m in mods: - if (m.findtext('type') == 'Standard' - or m.findtext('type') == 'AaSubstitution'): + if (m.findtext('type') == 'Standard' or m.findtext('type') == 'AaSubstitution'): standard_mods.append(m.get('title')) elif m.findtext('type') == 'Label': label_mods.append(m.get('title'))
--- a/maxquant_mqpar.xml Wed Aug 07 10:50:29 2019 -0400 +++ b/maxquant_mqpar.xml Thu Aug 15 08:09:38 2019 -0400 @@ -175,9 +175,8 @@ - Thermo raw file or mzXML file - The datatype has to be 'thermo.raw' or 'mzXML'. Make sure to specify the correct datatype either during upload to Galaxy or afterwards (edit attributes --> datatypes) -- Optional files: - - mqpar.xml: - - MaxQuant parameters will be taken from the provided mqpar.xml file. This parameter file MUST be created using the same version of MaxQuant as is used by this tool. The correct version of MaxQuant can be obtained via the bioconda channel for the conda package manager. +- mqpar.xml: + - MaxQuant parameters will be taken from the provided mqpar.xml file. This parameter file MUST be created using the same version of MaxQuant as is used by this tool. The correct version of MaxQuant can be obtained via the bioconda channel for the conda package manager. **Output files**