comparison metanovo.xml @ 1:6066b729f9aa draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metanovo commit 1ae5ba121b7274f47ce5fc35db0965d3c9b0c451"

0:9025f297a511

  <requirements>
    <requirement type="package" version="@TOOL_VERSION@">metanovo</requirement>
  </requirements>
  <macros>
    <token name="@TOOL_VERSION@">1.9.4</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@SUBSTITUTION_RX@">[^\w\-\.]</token>
    <import>macros_modifications.xml</import>
  </macros>
  <command>
    <![CDATA[
      #set $mgf_dir = 'mgf_files'
      #set $fasta_dir = 'fasta_file'
      #set fasta_name = re.sub('@SUBSTITUTION_RX@', '_', str($input_fasta.element_identifier))
      mkdir $mgf_dir &&
      mkdir $fasta_dir &&

1:6066b729f9aa

  <requirements>
    <requirement type="package" version="@TOOL_VERSION@">metanovo</requirement>
  </requirements>
  <macros>
    <token name="@TOOL_VERSION@">1.9.4</token>
    <token name="@VERSION_SUFFIX@">1</token>
    <token name="@SUBSTITUTION_RX@">[^\w\-\.]</token>
    <import>macros_modifications.xml</import>
  </macros>
  <command>
    <![CDATA[
      #import re
      #set $mgf_dir = 'mgf_files'
      #set $fasta_dir = 'fasta_file'
      #set fasta_name = re.sub('@SUBSTITUTION_RX@', '_', str($input_fasta.element_identifier))
      mkdir $mgf_dir &&
      mkdir $fasta_dir &&