diff metaquantome_db.xml @ 6:e63db1aa82ee draft default tip

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit ec66b5b0627e7cf15b6e67e90d82ba8e0743b761

--- a/metaquantome_db.xml	Wed Jun 16 20:00:49 2021 +0000
+++ b/metaquantome_db.xml	Mon Mar 18 12:34:24 2024 +0000
@@ -3,7 +3,8 @@
     <macros>
         <import>macros.xml</import>
     </macros>
-    <expand macro="requirements" />
+    <expand macro="xrefs"/>
+    <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
         mkdir -p data &&
         #set $database_list = str($databases).split(',')
@@ -14,26 +15,25 @@
         tar --create --file '$outfile' data
     ]]></command>
     <inputs>
-        <param name="databases" type="select" multiple="True" display="checkboxes"
-          label="Databases to Download">
-          <option value="ncbi" selected="true">NCBI Taxonomy Database</option>
-          <option value="go" selected="true">Gene Ontology Database</option>
-          <option value="ec" selected="true">Enzyme Commission (EC) database</option>
+        <param name="databases" type="select" multiple="True" display="checkboxes" label="Databases to Download">
+            <option value="ncbi" selected="true">NCBI Taxonomy Database</option>
+            <option value="go" selected="true">Gene Ontology Database</option>
+            <option value="ec" selected="true">Enzyme Commission (EC) database</option>
         </param>
     </inputs>
     <outputs>
         <data format="tar" name="outfile" label="metaquantome databases"/>
     </outputs>
     <tests>
-      <test>
-        <param name="databases" value="go"/>
-        <output name="outfile">
-          <assert_contents>
-            <has_text text="ontology: go"/>
-            <has_text text="ontology: go/subsets/goslim_metagenomics"/>
-          </assert_contents>
-        </output>
-      </test>
+        <test>
+            <param name="databases" value="go"/>
+            <output name="outfile">
+                <assert_contents>
+                    <has_text text="ontology: go"/>
+                    <has_text text="ontology: go/subsets/goslim_metagenomics"/>
+                </assert_contents>
+            </output>
+        </test>
     </tests>
     <help>
 <![CDATA[
@@ -69,5 +69,5 @@
 
 Please file any issues at https://github.com/galaxyproteomics/tools-galaxyp/issues.
 ]]></help>
-    <expand macro="citations" />
+    <expand macro="citations"/>
 </tool>