# HG changeset patch
# User galaxyp
# Date 1710765237 0
# Node ID 767c1d761aaff6b3caa8d2df9a42902d729482ad
# Parent 4187b6df1a40d55d969b3f33830a82d0b9201f08
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit ec66b5b0627e7cf15b6e67e90d82ba8e0743b761
diff -r 4187b6df1a40 -r 767c1d761aaf macros.xml
--- a/macros.xml Wed Jun 16 20:01:14 2021 +0000
+++ b/macros.xml Mon Mar 18 12:33:57 2024 +0000
@@ -1,32 +1,37 @@
2.0.2
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+ metaQuantome
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- metaquantome
+ metaquantome
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+ 10.1021/ACS.JPROTEOME.0C00960
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diff -r 4187b6df1a40 -r 767c1d761aaf metaquantome_expand.xml
--- a/metaquantome_expand.xml Wed Jun 16 20:01:14 2021 +0000
+++ b/metaquantome_expand.xml Mon Mar 18 12:33:57 2024 +0000
@@ -1,58 +1,54 @@
- a set of functional or taxonomy annotations
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+ a set of functional or taxonomy annotations
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+ macros.xml
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Name of column in taxonomy annotation file that contains
the lowest common ancestor (LCA) annotation. The annotations must
be either NCBI taxids (strongly preferred) or taxonomy
names.
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--func_file='$mode_args.func_file'
--pep_colname_func='$mode_args.pep_colname_func'
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--func_colname='$mode_args.func_colname'
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--ontology='$mode_args.ontology_args.ontology'
#if $mode_args.ontology_args.ontology == 'go'
#if $mode_args.ontology_args.slim_down
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#end if
#end if
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--tax_file='$mode_args.tax_file'
--pep_colname_tax='$mode_args.pep_colname_tax'
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--tax_colname='$mode_args.tax_colname'
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--ft_tar_rank='$mode_args.ft_tar_rank'
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