comparison metaquantome_stat.xml @ 1:982a442a98dd draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit 74c403057350af3dde81aea154414a0d6a84d2a3"

0:020a9ecdc1e1

        --mode '$mode_args.mode'
        #if $mode_args.mode == 'f' or $mode_args.mode == 'ft'
            --ontology='$mode_args.ontology_args.ontology'
        #end if
        --file '$file'
        --parametric '$parametric'
        $paired
        --outfile='$outfile'
    ]]></command>
    <inputs>

            </when>
            <when value="ft">
                <expand macro="ONTOLOGY_ARGS"/>
            </when>
        </conditional>
        <param argument="--parametric" type="select" label="Statistical test to perform">
            <option value="False" selected="true">Wilcoxon test (nonparametric)</option>
            <option value="True">standard t-test (parametric)</option>
        </param>
        <param argument="--paired" type="boolean" truevalue="--paired" falsevalue="" checked="false" label="Perform paired tests"/>

        <param name="file" value="ec_ttest.tab" ftype="tabular" />
        <param name="parametric" value="True" />
        <param name="ontology" value="ec" />
        <param name="mode" value="f" />
        <param name="samps" value="samples_basic.tab" ftype="tabular" />
        <output name="outfile" value="ec_ttest_tested.tab" ftype="tabular"/>
      </test>
    </tests>
    <help><![CDATA[
metaQuantome stat

1:982a442a98dd

        --mode '$mode_args.mode'
        #if $mode_args.mode == 'f' or $mode_args.mode == 'ft'
            --ontology='$mode_args.ontology_args.ontology'
        #end if
        --file '$file'
        --control_group '$control_group'
        --parametric '$parametric'
        $paired
        --outfile='$outfile'
    ]]></command>
    <inputs>

            </when>
            <when value="ft">
                <expand macro="ONTOLOGY_ARGS"/>
            </when>
        </conditional>
        <param argument="--control_group" type="text" label="Name of the control sample group of control (used as denominator for fold change evaluation).">
            <validator type="empty_field"/>
        </param>
        <param argument="--parametric" type="select" label="Statistical test to perform">
            <option value="False" selected="true">Wilcoxon test (nonparametric)</option>
            <option value="True">standard t-test (parametric)</option>
        </param>
        <param argument="--paired" type="boolean" truevalue="--paired" falsevalue="" checked="false" label="Perform paired tests"/>

        <param name="file" value="ec_ttest.tab" ftype="tabular" />
        <param name="parametric" value="True" />
        <param name="ontology" value="ec" />
        <param name="mode" value="f" />
        <param name="samps" value="samples_basic.tab" ftype="tabular" />
        <param name="control_group" value="s2"/>
        <output name="outfile" value="ec_ttest_tested.tab" ftype="tabular"/>
      </test>
    </tests>
    <help><![CDATA[
metaQuantome stat