Mercurial > repos > galaxyp > morpheus
diff macros.xml @ 3:8295d959ca28 draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
| author | galaxyp |
|---|---|
| date | Mon, 15 Jul 2024 18:21:24 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Mon Jul 15 18:21:24 2024 +0000 @@ -0,0 +1,77 @@ +<macros> + <token name="@TOOL_VERSION@">288</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">22.05</token> + <xml name="edam_ontology"> + <edam_topics> + <edam_topic>topic_0121</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_2479</edam_operation> + <edam_operation>operation_3092</edam_operation> + </edam_operations> + </xml> + <xml name="biotools"> + <xrefs> + <xref type="bio.tools">morpheus</xref> + </xrefs> + </xml> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">morpheus</requirement> + </requirements> + </xml> + <xml name="modification_options"> + <option value="acetylation of protein N-terminus">acetylation of protein N-terminus</option> + <option value="acetylation of lysine">acetylation of lysine</option> + <option value="phosphorylation of S">phosphorylation of S</option> + <option value="phosphorylation of T">phosphorylation of T</option> + <option value="phosphorylation of Y">phosphorylation of Y</option> + <option value="deamidation of N">deamidation of N</option> + <option value="deamidation of Q">deamidation of Q</option> + <option value="pyro-cmC">pyro-cmC</option> + <option value="pyro-E">pyro-E</option> + <option value="pyro-Q">pyro-Q</option> + <option value="TMT zero on peptide N-terminus">TMT zero on peptide N-terminus</option> + <option value="TMT zero on K">TMT zero on K</option> + <option value="TMT zero on Y">TMT zero on Y</option> + <option value="TMT duplex on peptide N-terminus">TMT duplex on peptide N-terminus</option> + <option value="TMT duplex on K">TMT duplex on K</option> + <option value="TMT duplex on Y">TMT duplex on Y</option> + <option value="TMT sixplex/tenplex on peptide N-terminus">TMT sixplex/tenplex on peptide N-terminus</option> + <option value="TMT sixplex/tenplex on K">TMT sixplex/tenplex on K</option> + <option value="TMT sixplex/tenplex on Y">TMT sixplex/tenplex on Y</option> + <option value="iTRAQ 4-plex on peptide N-terminus">iTRAQ 4-plex on peptide N-terminus</option> + <option value="iTRAQ 4-plex on K">iTRAQ 4-plex on K</option> + <option value="iTRAQ 4-plex on Y">iTRAQ 4-plex on Y</option> + <option value="iTRAQ 8-plex on peptide N-terminus">iTRAQ 8-plex on peptide N-terminus</option> + <option value="iTRAQ 8-plex on K">iTRAQ 8-plex on K</option> + <option value="iTRAQ 8-plex on Y ">iTRAQ 8-plex on Y </option> + </xml> + <xml name="variable_modification_options"> + <option value="oxidation of M" selected="true">oxidation of M</option> + <option value="carbamidomethylation of C">carbamidomethylation of C</option> + <expand macro="modification_options"/> + </xml> + <xml name="fixed_modification_options"> + <option value="carbamidomethylation of C" selected="true">carbamidomethylation of C</option> + <option value="oxidation of M">oxidation of M</option> + <expand macro="modification_options"/> + </xml> + <xml name="proteases_options"> + <option value="Arg-C">Arg-C</option> + <option value="Asp-N" >Asp-N</option> + <option value="chymotrypsin (no proline rule)" >chymotrypsin (no proline rule)</option> + <option value="Glu-C" >Glu-C</option> + <option value="Lys-C" >Lys-C</option> + <option value="Lys-C (no proline rule)" >Lys-C (no proline rule)</option> + <option value="Lys-N" >Lys-N</option> + <option value="semi-trypsin" >semi-trypsin</option> + <option value="semi-trypsin (no proline rule)" >semi-trypsin (no proline rule)</option> + <option value="trypsin" >trypsin</option> + <option value="trypsin (no proline rule)" selected="true">trypsin (no proline rule)</option> + <option value="tryptophan oxidation" >tryptophan oxidation</option> + <option value="non-specific" >non-specific</option> + <option value="top-down" >top-down</option> + </xml> +</macros>