# HG changeset patch
# User galaxyp
# Date 1676673531 0
# Node ID 514afed1f40dfe50f81bab961b139de69913c1f4
# Parent  2d9f216c1048cdc712237a657c3a71fc73b07a9e
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit aa5f4a19e76ec636812865293b8ee9b196122121

diff -r 2d9f216c1048 -r 514afed1f40d MaxQuantProcessingScript.R
--- a/MaxQuantProcessingScript.R	Tue Feb 14 17:37:48 2023 +0000
+++ b/MaxQuantProcessingScript.R	Fri Feb 17 22:38:51 2023 +0000
@@ -368,6 +368,8 @@
 local_prob_cutoff <- args$localProbCutoff
 enriched <- args$enriched
 collapse_fn <- args$collapse_func
+if (collapse_fn == "average")
+  collapse_fn <- "mean"
 
 ### EXTRACT PARAMETERS from arguments end ------------------------------------
 
diff -r 2d9f216c1048 -r 514afed1f40d macros.xml
--- a/macros.xml	Tue Feb 14 17:37:48 2023 +0000
+++ b/macros.xml	Fri Feb 17 22:38:51 2023 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@TOOL_VERSION@">0.1.18</token>
+    <token name="@TOOL_VERSION@">0.1.19</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <xml name="requirements">
         <requirements>
@@ -22,6 +22,10 @@
             <requirement type="package" version="1.7.3"   >r-optparse</requirement>
             <requirement type="package" version="1.4.4"   >r-reshape2</requirement>
             <requirement type="package" version="2.17"    >r-rmarkdown</requirement>
+            <!--
+            <requirement type="package" version="2.2.18"  >r-rsqlite</requirement>
+            <requirement type="package" version="0.4.2"   >r-sass</requirement>
+            -->
             <requirement type="package" version="1.2.2"   >r-sessioninfo</requirement>
             <requirement type="package" version="0.4_11"  >r-sqldf</requirement>
             <requirement type="package" version="1.4.1"   >r-stringr</requirement>