Mercurial > repos > galaxyp > mqppep_anova
changeset 5:514afed1f40d draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit aa5f4a19e76ec636812865293b8ee9b196122121
| author | galaxyp |
|---|---|
| date | Fri, 17 Feb 2023 22:38:51 +0000 |
| parents | 2d9f216c1048 |
| children | |
| files | MaxQuantProcessingScript.R macros.xml |
| diffstat | 2 files changed, 7 insertions(+), 1 deletions(-) [+] |
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--- a/MaxQuantProcessingScript.R Tue Feb 14 17:37:48 2023 +0000 +++ b/MaxQuantProcessingScript.R Fri Feb 17 22:38:51 2023 +0000 @@ -368,6 +368,8 @@ local_prob_cutoff <- args$localProbCutoff enriched <- args$enriched collapse_fn <- args$collapse_func +if (collapse_fn == "average") + collapse_fn <- "mean" ### EXTRACT PARAMETERS from arguments end ------------------------------------
--- a/macros.xml Tue Feb 14 17:37:48 2023 +0000 +++ b/macros.xml Fri Feb 17 22:38:51 2023 +0000 @@ -1,5 +1,5 @@ <macros> - <token name="@TOOL_VERSION@">0.1.18</token> + <token name="@TOOL_VERSION@">0.1.19</token> <token name="@VERSION_SUFFIX@">0</token> <xml name="requirements"> <requirements> @@ -22,6 +22,10 @@ <requirement type="package" version="1.7.3" >r-optparse</requirement> <requirement type="package" version="1.4.4" >r-reshape2</requirement> <requirement type="package" version="2.17" >r-rmarkdown</requirement> + <!-- + <requirement type="package" version="2.2.18" >r-rsqlite</requirement> + <requirement type="package" version="0.4.2" >r-sass</requirement> + --> <requirement type="package" version="1.2.2" >r-sessioninfo</requirement> <requirement type="package" version="0.4_11" >r-sqldf</requirement> <requirement type="package" version="1.4.1" >r-stringr</requirement>