Mercurial > repos > galaxyp > mqppep_preproc

diff MaxQuantProcessingScript.R @ 5:b889e05ce77d draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit aa5f4a19e76ec636812865293b8ee9b196122121
author galaxyp
date Fri, 17 Feb 2023 22:38:40 +0000
parents bae3a23461c9
children
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--- a/MaxQuantProcessingScript.R	Tue Feb 14 17:37:36 2023 +0000
+++ b/MaxQuantProcessingScript.R	Fri Feb 17 22:38:40 2023 +0000
@@ -368,6 +368,8 @@
 local_prob_cutoff <- args$localProbCutoff
 enriched <- args$enriched
 collapse_fn <- args$collapse_func
+if (collapse_fn == "average")
+  collapse_fn <- "mean"
 
 ### EXTRACT PARAMETERS from arguments end ------------------------------------