Mercurial > repos > galaxyp > ms_data_converter
diff ms_data_converter.xml @ 1:a36e9f847308 default tip
Fixes for running on Windows via pulsar
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Wed, 11 Mar 2015 16:47:12 -0500 |
| parents | dfafbfd7983d |
| children |
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--- a/ms_data_converter.xml Wed Mar 11 11:36:26 2015 -0400 +++ b/ms_data_converter.xml Wed Mar 11 16:47:12 2015 -0500 @@ -18,16 +18,18 @@ #end if --input="${input.extra_files_path}/wiff" --input_name="${basename}.wiff" - #if $os.path.exists($os.path.join($input.extra_files_path,'wiff_scan')): + #### The os.path.exist did not work on Windows + ## #if $os.path.exists($os.path.join($input.extra_files_path,'wiff_scan')): --implicit="${input.extra_files_path}/wiff_scan" --input="${input.extra_files_path}/wiff_scan" --input_name="${basename}.wiff.scan" - #end if - #if $os.path.exists($os.path.join($input.extra_files_path,'wiff_mtd')): + ## #end if + #### The os.path.exist did not work on Windows + ## #if $os.path.exists($os.path.join($input.extra_files_path,'wiff_mtd')): --implicit="${input.extra_files_path}/wiff_mtd" --input="${input.extra_files_path}/wiff_mtd" --input_name="${basename}.wiff.mtd" - #end if + ## #end if --output=${output} ## BEGIN_VERSION_DEFAULT --fromextension=$ext @@ -39,6 +41,7 @@ --binaryencoding=${result.precision} --index=${result.index} #end if + --debug </command> <inputs>