annotate msconvert.xml @ 12:9ec469ff191a draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit ecdc3a64aa245d80dbc5487b2bf10a85a43adc6d
author galaxyp
date Fri, 22 Mar 2019 14:18:29 -0400
parents 9d5de24e6ef7
children 9b61227976d6
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
10
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
1 <tool id="msconvert" name="msconvert" version="@VERSION@.0">
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
2 <description>Convert and/or filter mass spectrometry files</description>
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
3 <macros>
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
4 <import>msconvert_macros.xml</import>
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
5 </macros>
8
d2c61663e33c Uploaded
galaxyp
parents:
diff changeset
6 <requirements>
10
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
7 <container type="docker">chambm/pwiz-skyline-i-agree-to-the-vendor-licenses:@FULL_VERSION@</container>
8
d2c61663e33c Uploaded
galaxyp
parents:
diff changeset
8 </requirements>
10
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
9 <expand macro="msconvertCommand" />
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
10 <inputs>
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
11 <param format="mzml,mzxml,mz5,mgf,ms2,thermo.raw,raw,wiff,wiff.tar,agilentbrukeryep.d.tar,agilentmasshunter.d.tar,brukerbaf.d.tar,brukertdf.d.tar,watersmasslynx.raw.tar" name="input" type="data" label="Input unrefined MS data" />
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
12 <expand macro="msconvertInputParameters" />
8
d2c61663e33c Uploaded
galaxyp
parents:
diff changeset
13 </inputs>
10
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
14 <expand macro="msconvertOutput" />
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
15 <tests>
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
16 <expand macro="msconvert_tests" />
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
17 </tests>
8
d2c61663e33c Uploaded
galaxyp
parents:
diff changeset
18 <help>
10
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
19 <expand macro="msconvert_help" />
8
d2c61663e33c Uploaded
galaxyp
parents:
diff changeset
20 </help>
10
9d5de24e6ef7 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents: 9
diff changeset
21 <expand macro="citations" />
8
d2c61663e33c Uploaded
galaxyp
parents:
diff changeset
22 </tool>