Mercurial > repos > galaxyp > msconvert
annotate msconvert.xml @ 11:cc5ccfa8ee28 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 3c189141a9dd1d44d44af82ccd9b6e9d3742f93d
author | galaxyp |
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date | Thu, 28 Feb 2019 14:14:44 -0500 |
parents | 9d5de24e6ef7 |
children | 9b61227976d6 |
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9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
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1 <tool id="msconvert" name="msconvert" version="@VERSION@.0"> |
9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
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changeset
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2 <description>Convert and/or filter mass spectrometry files</description> |
9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
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3 <macros> |
9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents:
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4 <import>msconvert_macros.xml</import> |
9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents:
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changeset
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5 </macros> |
8 | 6 <requirements> |
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9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents:
9
diff
changeset
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7 <container type="docker">chambm/pwiz-skyline-i-agree-to-the-vendor-licenses:@FULL_VERSION@</container> |
8 | 8 </requirements> |
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9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents:
9
diff
changeset
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9 <expand macro="msconvertCommand" /> |
9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents:
9
diff
changeset
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10 <inputs> |
9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents:
9
diff
changeset
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11 <param format="mzml,mzxml,mz5,mgf,ms2,thermo.raw,raw,wiff,wiff.tar,agilentbrukeryep.d.tar,agilentmasshunter.d.tar,brukerbaf.d.tar,brukertdf.d.tar,watersmasslynx.raw.tar" name="input" type="data" label="Input unrefined MS data" /> |
9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents:
9
diff
changeset
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12 <expand macro="msconvertInputParameters" /> |
8 | 13 </inputs> |
10
9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents:
9
diff
changeset
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14 <expand macro="msconvertOutput" /> |
9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents:
9
diff
changeset
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15 <tests> |
9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents:
9
diff
changeset
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16 <expand macro="msconvert_tests" /> |
9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents:
9
diff
changeset
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17 </tests> |
8 | 18 <help> |
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9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents:
9
diff
changeset
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19 <expand macro="msconvert_help" /> |
8 | 20 </help> |
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9d5de24e6ef7
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
galaxyp
parents:
9
diff
changeset
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21 <expand macro="citations" /> |
8 | 22 </tool> |