annotate msconvert.xml @ 11:cc5ccfa8ee28 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 3c189141a9dd1d44d44af82ccd9b6e9d3742f93d

<tool id="msconvert" name="msconvert" version="@VERSION@.0">
  <description>Convert and/or filter mass spectrometry files</description>
  <macros>
      <import>msconvert_macros.xml</import>
  </macros>
  <requirements>
      <container type="docker">chambm/pwiz-skyline-i-agree-to-the-vendor-licenses:@FULL_VERSION@</container>
  </requirements>
  <expand macro="msconvertCommand" />
  <inputs> 
      <param format="mzml,mzxml,mz5,mgf,ms2,thermo.raw,raw,wiff,wiff.tar,agilentbrukeryep.d.tar,agilentmasshunter.d.tar,brukerbaf.d.tar,brukertdf.d.tar,watersmasslynx.raw.tar" name="input" type="data" label="Input unrefined MS data" />
      <expand macro="msconvertInputParameters" />
  </inputs>
  <expand macro="msconvertOutput" />
  <tests>
      <expand macro="msconvert_tests" />
  </tests>
  <help>
      <expand macro="msconvert_help" />
  </help>
  <expand macro="citations" />
</tool>