comparison msconvert2_raw.xml @ 5:08bb52273ae1

Bjoern: remove unused repository dependency, cleanups

4:001e77708ec9

<tool id="msconvert2_raw" name="msconvert2_raw" version="0.2.0">
  <!-- BEGIN_VERSION_RAW -->
  <description>Convert and filter a Thermo Finnigan RAW file</description>
  <!-- END_VERSION_RAW -->

  <command interpreter="python">
    #set $ext = $input.ext
    #if $ext.startswith("m:")
    #set $ext = $ext[len("m:"):]
    #end if

        <when input="output_type" value="ms2" format="ms2" />
        <when input="output_type" value="mgf" format="mgf" />
      </change_format>
    </data>
  </outputs>

  <requirements>
    <requirement type="package">proteowizard</requirement>    
    <!-- BEGIN_VERSION_RAW -->
    <requirement type="platform">windows</requirement>
    <!-- END_VERSION_RAW -->    
  </requirements>

  <help>
**What it does**

Converts between various mass spectrometry peak list representations. Additional options such as filtering and/or precursor recalculation are available.

5:08bb52273ae1

<tool id="msconvert2_raw" name="msconvert2_raw" version="0.2.1">
  <!-- BEGIN_VERSION_RAW -->
  <description>Convert and filter a Thermo Finnigan RAW file</description>
  <!-- END_VERSION_RAW -->
  <requirements>
    <requirement type="package">proteowizard</requirement>
    <!-- BEGIN_VERSION_RAW -->
    <requirement type="platform">windows</requirement>
    <!-- END_VERSION_RAW -->
  </requirements>
  <command interpreter="python">
    #set $ext = $input.ext
    #if $ext.startswith("m:")
    #set $ext = $ext[len("m:"):]
    #end if

        <when input="output_type" value="ms2" format="ms2" />
        <when input="output_type" value="mgf" format="mgf" />
      </change_format>
    </data>
  </outputs>
  <help>
**What it does**

Converts between various mass spectrometry peak list representations. Additional options such as filtering and/or precursor recalculation are available.