Mercurial > repos > galaxyp > msconvert
comparison msconvert_subset.xml @ 5:08bb52273ae1
Bjoern: remove unused repository dependency, cleanups
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Mon, 17 Feb 2014 08:13:33 -0600 |
| parents | 861e3f0c2bb6 |
| children |
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| 4:001e77708ec9 | 5:08bb52273ae1 |
|---|---|
| 1 <tool id="msconvert_subset" name="Subset Peak List" version="0.2.0"> | 1 <tool id="msconvert_subset" name="Subset Peak List" version="0.2.1"> |
| 2 <description>against list of scan numbers or indices.</description> | 2 <description>against list of scan numbers or indices.</description> |
| 3 <requirements> | |
| 4 <requirement type="package">proteowizard</requirement> | |
| 5 </requirements> | |
| 3 <command interpreter="python"> | 6 <command interpreter="python"> |
| 4 msconvert_wrapper.py | 7 msconvert_wrapper.py |
| 5 --input=${input} | 8 --input=${input} |
| 6 --output=${output} | 9 --output=${output} |
| 7 --fromextension=${input.ext} | 10 --fromextension=${input.ext} |
| 93 <when input="output_type" value="ms2" format="ms2" /> | 96 <when input="output_type" value="ms2" format="ms2" /> |
| 94 <when input="output_type" value="mgf" format="mgf" /> | 97 <when input="output_type" value="mgf" format="mgf" /> |
| 95 </change_format> | 98 </change_format> |
| 96 </data> | 99 </data> |
| 97 </outputs> | 100 </outputs> |
| 98 | |
| 99 <requirements> | |
| 100 <requirement type="package">proteowizard</requirement> | |
| 101 </requirements> | |
| 102 | |
| 103 <help> | 101 <help> |
| 104 </help> | 102 </help> |
| 105 </tool> | 103 </tool> |