Mercurial > repos > galaxyp > msconvert
comparison README_REPO.md @ 7:37e5502441cc draft
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author | galaxyp |
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date | Mon, 17 Feb 2014 17:00:29 -0500 |
parents | 10f4a0356342 |
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6:ffe1dca94595 | 7:37e5502441cc |
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1 # msconvert | |
2 | |
3 This repository contains Galaxy tool wrappers for msconvert, part of | |
4 the ProteoWizard (http://proteowizard.sourceforge.net/) package. | |
5 | |
6 # Installing | |
7 | |
8 Due to potential difficulties installing ProteoWizard with vendor | |
9 library support, tools for interacting with vendor types are seperated | |
10 out into their own wrappers. Galaxy is generally deployed under Linux, | |
11 but vendor support in ProteoWizard requires .NET 4.0. There are at | |
12 least two ways to get this to work: | |
13 | |
14 * Galaxy jobs may be configured to submit to a Windows host with | |
15 ProteoWizard installed using the | |
16 LWR. http://wiki.g2.bx.psu.edu/Admin/Config/LWR | |
17 | |
18 * ProteoWizard can be installed under Wine. Guidance on how to set | |
19 this up and package such environments for cloud deployments can be | |
20 found here: https://github.com/jmchilton/proteomics-wine-env | |
21 | |
22 Wrappers for both msconvert version 2 and version 3+ are provided | |
23 because version 3+ of msconvert with vendor library support requires | |
24 .NET 4.0 and this may difficult or impossible under Wine in Linux with | |
25 all but the most recent versions of Wine (1.4+). |