Mercurial > repos > galaxyp > msconvert
comparison msconvert3_raw.xml @ 3:7e41529ee90c
added repo and tool dependencies
author | galaxyp |
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date | Thu, 20 Jun 2013 16:08:23 -0400 |
parents | 861e3f0c2bb6 |
children | 001e77708ec9 |
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2:50e30fb68be2 | 3:7e41529ee90c |
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2 <!-- BEGIN_VERSION_RAW --> | 2 <!-- BEGIN_VERSION_RAW --> |
3 <description>Convert and filter a Thermo Finnigan RAW file</description> | 3 <description>Convert and filter a Thermo Finnigan RAW file</description> |
4 <!-- END_VERSION_RAW --> | 4 <!-- END_VERSION_RAW --> |
5 | 5 |
6 <command interpreter="python"> | 6 <command interpreter="python"> |
7 #set $ext = $input.ext | |
8 #if $ext.startswith("m:") | |
9 #set $ext = $ext[len("m:"):] | |
10 #end if | |
7 msconvert_wrapper.py | 11 msconvert_wrapper.py |
8 --input=${input} | 12 --input=${input} |
9 #if hasattr($input, 'display_name') | 13 #if hasattr($input, 'display_name') |
10 --input_name='${input.display_name}' | 14 --input_name='${input.display_name}' |
11 #end if | 15 #end if |
333 </data> | 337 </data> |
334 </outputs> | 338 </outputs> |
335 | 339 |
336 <requirements> | 340 <requirements> |
337 <requirement type="package">proteowizard</requirement> | 341 <requirement type="package">proteowizard</requirement> |
342 <!-- BEGIN_VERSION_RAW --> | |
343 <requirement type="platform">windows</requirement> | |
344 <!-- END_VERSION_RAW --> | |
338 </requirements> | 345 </requirements> |
339 | 346 |
340 <help> | 347 <help> |
341 **What it does** | 348 **What it does** |
342 | 349 |