Mercurial > repos > galaxyp > msconvert
comparison test-data/small-strip-it.mzML @ 10:9d5de24e6ef7 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d595e3cfe190a61d81005f9be7c2652aa5f91292
| author | galaxyp |
|---|---|
| date | Sat, 23 Feb 2019 06:25:48 -0500 |
| parents | dd4ba10d0c45 |
| children | 6153e8ada1ee |
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| 9:dd4ba10d0c45 | 10:9d5de24e6ef7 |
|---|---|
| 1 <?xml version="1.0" encoding="utf-8"?> | 1 <?xml version="1.0" encoding="utf-8"?> |
| 2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd"> | 2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd"> |
| 3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0"> | 3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0"> |
| 4 <cvList count="2"> | 4 <cvList count="2"> |
| 5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="3.79.0" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/> | 5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="4.1.12" URI="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo"/> |
| 6 <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/> | 6 <cv id="UO" fullName="Unit Ontology" version="09:04:2014" URI="https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo"/> |
| 7 </cvList> | 7 </cvList> |
| 8 <fileDescription> | 8 <fileDescription> |
| 9 <fileContent> | 9 <fileContent> |
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| 12 </fileContent> | 12 </fileContent> |
| 13 <sourceFileList count="3"> | 13 <sourceFileList count="3"> |
| 14 <sourceFile id="RAW1" name="small.RAW" location="file:///C:\pwiz-src\trunk\pwiz\example_data"> | 14 <sourceFile id="RAW1" name="small.RAW" location="file:///"> |
| 15 <cvParam cvRef="MS" accession="MS:1000768" name="Thermo nativeID format" value=""/> | 15 <cvParam cvRef="MS" accession="MS:1000768" name="Thermo nativeID format" value=""/> |
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| 18 </sourceFile> | 18 </sourceFile> |
| 19 <sourceFile id="small.mzML" name="small.mzML" location="file:///"> | 19 <sourceFile id="small.mzML" name="small.mzML" location="file:///"> |
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| 21 </sourceFile> | 21 </sourceFile> |
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| 25 </sourceFileList> | 25 </sourceFileList> |
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| 27 <referenceableParamGroupList count="1"> | 27 <referenceableParamGroupList count="1"> |
| 28 <referenceableParamGroup id="CommonInstrumentParams"> | 28 <referenceableParamGroup id="CommonInstrumentParams"> |
| 29 <cvParam cvRef="MS" accession="MS:1000448" name="LTQ FT" value=""/> | 29 <cvParam cvRef="MS" accession="MS:1000448" name="LTQ FT" value=""/> |
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| 31 </referenceableParamGroup> | 31 </referenceableParamGroup> |
| 32 </referenceableParamGroupList> | 32 </referenceableParamGroupList> |
| 33 <softwareList count="3"> | 33 <softwareList count="4"> |
| 34 <software id="Xcalibur" version="1.1 Beta 7"> | 34 <software id="Xcalibur" version="1.1 Beta 7"> |
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| 36 </software> | 36 </software> |
| 37 <software id="pwiz" version="3.0.8981"> | 37 <software id="pwiz" version="3.0.8981"> |
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| 42 </software> | 45 </software> |
| 43 </softwareList> | 46 </softwareList> |
| 44 <instrumentConfigurationList count="2"> | 47 <instrumentConfigurationList count="2"> |
| 45 <instrumentConfiguration id="IC1"> | 48 <instrumentConfiguration id="IC1"> |
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| 82 </processingMethod> | 85 </processingMethod> |
| 83 </dataProcessing> | 86 </dataProcessing> |
| 84 <dataProcessing id="pwiz_Reader_conversion"> | 87 <dataProcessing id="pwiz_Reader_conversion"> |
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| 93 <run id="small" defaultInstrumentConfigurationRef="IC1" startTimeStamp="2005-07-20T14:44:22Z" defaultSourceFileRef="RAW1"> | 96 <run id="small" defaultInstrumentConfigurationRef="IC1" startTimeStamp="2005-07-20T14:44:22Z" defaultSourceFileRef="RAW1"> |
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