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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 2cce57c0b3173029ce8fb3e7b4607b3913581dfd
author galaxyp
date Sun, 24 Mar 2024 11:13:43 +0000
parents 9d5de24e6ef7
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15:6153e8ada1ee 16:545054b15d7c
9 Description 9 Description
10 ----------- 10 -----------
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12 msconvert from ProteoWizard. 12 msconvert from ProteoWizard.
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14 Note: This requires manual installation of ProteoWizard, and may require a Windows environment. 14 Convert and/or filter mass spectrometry files using the offical Docker container.
15 Using the Docker container requires agreeing to each vendor's license (for using their proprietary data access libraries): http://www.proteowizard.org/licenses.html
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17 Main web site: http://www.proteowizard.org
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16 See: 19 See:
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18 * <http://proteowizard.sourceforge.net/> 21 * <http://proteowizard.sourceforge.net/>
19 * <http://proteowizard.sourceforge.net/tools/msconvert.html> 22 * <http://proteowizard.sourceforge.net/tools/msconvert.html>
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22 Installing 25 #### Note about installing older versions:
23 ---------- 26
27 Version 0.3.0 (2016) and earlier require manual installation of ProteoWizard, and may require a Windows environment.
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25 Due to potential difficulties installing ProteoWizard with vendor library support, tools for interacting with vendor types are seperated out into their own wrappers. Galaxy is generally deployed under Linux, but vendor support in ProteoWizard requires .NET 4.0. There are at least two ways to get this to work: 29 Due to potential difficulties installing ProteoWizard with vendor library support, tools for interacting with vendor types are seperated out into their own wrappers. Galaxy is generally deployed under Linux, but vendor support in ProteoWizard requires .NET 4.0. There are at least two ways to get this to work:
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27 * Galaxy jobs may be configured to submit to a Windows host with ProteoWizard installed using the [LWR](https://wiki.g2.bx.psu.edu/Admin/Config/LWR). 31 * Galaxy jobs may be configured to submit to a Windows host with ProteoWizard installed using the [LWR](https://wiki.g2.bx.psu.edu/Admin/Config/LWR).
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