Mercurial > repos > galaxyp > msconvert
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author | galaxyp |
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date | Mon, 17 Feb 2014 17:00:29 -0500 |
parents | 10f4a0356342 |
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# msconvert This repository contains Galaxy tool wrappers for msconvert, part of the ProteoWizard (http://proteowizard.sourceforge.net/) package. # Installing Due to potential difficulties installing ProteoWizard with vendor library support, tools for interacting with vendor types are seperated out into their own wrappers. Galaxy is generally deployed under Linux, but vendor support in ProteoWizard requires .NET 4.0. There are at least two ways to get this to work: * Galaxy jobs may be configured to submit to a Windows host with ProteoWizard installed using the LWR. http://wiki.g2.bx.psu.edu/Admin/Config/LWR * ProteoWizard can be installed under Wine. Guidance on how to set this up and package such environments for cloud deployments can be found here: https://github.com/jmchilton/proteomics-wine-env Wrappers for both msconvert version 2 and version 3+ are provided because version 3+ of msconvert with vendor library support requires .NET 4.0 and this may difficult or impossible under Wine in Linux with all but the most recent versions of Wine (1.4+). # Obtaining Tools Repositories for all Galaxy-P tools can be found at https:/bitbucket.org/galaxyp/. # Contact Please send suggestions for improvements and bug reports to jmchilton@gmail.com. # License All Galaxy-P tools are licensed under the Apache License Version 2.0 unless otherwise documented. # Tool Versioning Galaxy-P tools will have versions of the form X.Y.Z. Versions differing only after the second decimal should be completely compatible with each other. Breaking changes should result in an increment of the number before and/or after the first decimal. All tools of version less than 1.0.0 should be considered beta.