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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit e3d24f3dc7a9812f8fa4447c9391e5bd3b5d4dc6
author galaxyp
date Thu, 15 Aug 2024 16:19:28 +0000
parents 6153e8ada1ee
children
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<?xml version="1.0" encoding="utf-8"?>
<indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd">
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      <cv id="UO" fullName="Unit Ontology" version="09:04:2014" URI="https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo"/>
    </cvList>
    <fileDescription>
      <fileContent>
        <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/>
      </fileContent>
      <sourceFileList count="1">
        <sourceFile id="BrukerBafTest.d_x005c_Analysis.baf" name="Analysis.baf" location="file:///">
          <cvParam cvRef="MS" accession="MS:1000772" name="Bruker BAF nativeID format" value=""/>
          <cvParam cvRef="MS" accession="MS:1000815" name="Bruker BAF format" value=""/>
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      </referenceableParamGroup>
    </referenceableParamGroupList>
    <softwareList count="3">
      <software id="BAF2SQL" version="2.7.300.20-112">
        <cvParam cvRef="MS" accession="MS:1000692" name="Bruker software" value=""/>
        <userParam name="software name" value="BAF2SQL"/>
      </software>
      <software id="apexControl" version="ApexControl 3.0.0.alpha.35 (development version, April 18, 2008)">
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      </software>
      <software id="pwiz_Reader_Bruker" version="3.0.20287">
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      </software>
    </softwareList>
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          </analyzer>
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          </detector>
        </componentList>
        <softwareRef ref="apexControl"/>
      </instrumentConfiguration>
    </instrumentConfigurationList>
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        </processingMethod>
        <processingMethod order="1" softwareRef="pwiz_Reader_Bruker">
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          <userParam name="Bruker/Agilent/CompassXtract peak picking"/>
        </processingMethod>
      </dataProcessing>
    </dataProcessingList>
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        </spectrum>
      </spectrumList>
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  </mzML>
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</indexedmzML>