Mercurial > repos > galaxyp > msconvert_nix
comparison test-data/small-mzWindow.mzML @ 1:7016f1f10f42 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d56659dd48f8c554a832787e71aca6ae65c90848
author | galaxyp |
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date | Tue, 14 Mar 2017 16:45:30 -0400 |
parents | baa6c072fccc |
children |
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0:baa6c072fccc | 1:7016f1f10f42 |
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1 <?xml version="1.0" encoding="utf-8"?> | 1 <?xml version="1.0" encoding="utf-8"?> |
2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd"> | 2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd"> |
3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0"> | 3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0"> |
4 <cvList count="2"> | 4 <cvList count="2"> |
5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="3.79.0" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/> | 5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="4.0.1" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/> |
6 <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/> | 6 <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/> |
7 </cvList> | 7 </cvList> |
8 <fileDescription> | 8 <fileDescription> |
9 <fileContent> | 9 <fileContent> |
10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/> | 10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/> |
18 </sourceFile> | 18 </sourceFile> |
19 <sourceFile id="small.mzML" name="small.mzML" location="file:///"> | 19 <sourceFile id="small.mzML" name="small.mzML" location="file:///"> |
20 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="4efa13a2795731b5f2a1ff1c463daf0d24b9a9d9"/> | 20 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="4efa13a2795731b5f2a1ff1c463daf0d24b9a9d9"/> |
21 </sourceFile> | 21 </sourceFile> |
22 <sourceFile id="small-peakpicking-cwt-allMS.mzML" name="small-peakpicking-cwt-allMS.mzML" location="file:///"> | 22 <sourceFile id="small-peakpicking-cwt-allMS.mzML" name="small-peakpicking-cwt-allMS.mzML" location="file:///"> |
23 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="8af1e376b6ed33679f7fcf965a5e7fd6b1bf77b7"/> | 23 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="2d5cdd239d18de37386cf9409e30693767b16f82"/> |
24 </sourceFile> | 24 </sourceFile> |
25 </sourceFileList> | 25 </sourceFileList> |
26 </fileDescription> | 26 </fileDescription> |
27 <referenceableParamGroupList count="1"> | 27 <referenceableParamGroupList count="1"> |
28 <referenceableParamGroup id="CommonInstrumentParams"> | 28 <referenceableParamGroup id="CommonInstrumentParams"> |
35 <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur" value=""/> | 35 <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur" value=""/> |
36 </software> | 36 </software> |
37 <software id="pwiz" version="3.0.8981"> | 37 <software id="pwiz" version="3.0.8981"> |
38 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/> | 38 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/> |
39 </software> | 39 </software> |
40 <software id="pwiz_3.0.8990" version="3.0.8990"> | 40 <software id="pwiz_3.0.9987" version="3.0.9987"> |
41 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/> | 41 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/> |
42 </software> | 42 </software> |
43 </softwareList> | 43 </softwareList> |
44 <instrumentConfigurationList count="2"> | 44 <instrumentConfigurationList count="2"> |
45 <instrumentConfiguration id="IC1"> | 45 <instrumentConfiguration id="IC1"> |
80 <processingMethod order="0" softwareRef="pwiz"> | 80 <processingMethod order="0" softwareRef="pwiz"> |
81 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/> | 81 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/> |
82 </processingMethod> | 82 </processingMethod> |
83 </dataProcessing> | 83 </dataProcessing> |
84 <dataProcessing id="pwiz_Reader_conversion"> | 84 <dataProcessing id="pwiz_Reader_conversion"> |
85 <processingMethod order="0" softwareRef="pwiz_3.0.8990"> | 85 <processingMethod order="0" softwareRef="pwiz_3.0.9987"> |
86 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/> | 86 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/> |
87 </processingMethod> | 87 </processingMethod> |
88 <processingMethod order="1" softwareRef="pwiz_3.0.8990"> | 88 <processingMethod order="1" softwareRef="pwiz_3.0.9987"> |
89 <cvParam cvRef="MS" accession="MS:1000035" name="peak picking" value=""/> | 89 <cvParam cvRef="MS" accession="MS:1000035" name="peak picking" value=""/> |
90 </processingMethod> | 90 </processingMethod> |
91 </dataProcessing> | 91 </dataProcessing> |
92 </dataProcessingList> | 92 </dataProcessingList> |
93 <run id="small" defaultInstrumentConfigurationRef="IC1" startTimeStamp="2005-07-20T14:44:22Z" defaultSourceFileRef="RAW1"> | 93 <run id="small" defaultInstrumentConfigurationRef="IC1" startTimeStamp="2005-07-20T14:44:22Z" defaultSourceFileRef="RAW1"> |
2714 </chromatogramList> | 2714 </chromatogramList> |
2715 </run> | 2715 </run> |
2716 </mzML> | 2716 </mzML> |
2717 <indexList count="2"> | 2717 <indexList count="2"> |
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2767 </index> | 2767 </index> |
2768 <index name="chromatogram"> | 2768 <index name="chromatogram"> |
2769 <offset idRef="TIC">330016</offset> | 2769 <offset idRef="TIC">330015</offset> |
2770 </index> | 2770 </index> |
2771 </indexList> | 2771 </indexList> |
2772 <indexListOffset>331966</indexListOffset> | 2772 <indexListOffset>331965</indexListOffset> |
2773 <fileChecksum>eb547bb98aaca512c02f4ad9f58e484f3f1b96da</fileChecksum> | 2773 <fileChecksum>e0bc0b6a6d51fe2763472838f0378aba83a6d6f2</fileChecksum> |
2774 </indexedmzML> | 2774 </indexedmzML> |