Mercurial > repos > galaxyp > msconvert_nix

diff test-data/small-ms-level-filter.mzML @ 1:7016f1f10f42 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d56659dd48f8c554a832787e71aca6ae65c90848
author galaxyp
date Tue, 14 Mar 2017 16:45:30 -0400
parents baa6c072fccc
children
line wrap: on
line diff
--- a/test-data/small-ms-level-filter.mzML	Fri Apr 08 16:08:09 2016 -0400
+++ b/test-data/small-ms-level-filter.mzML	Tue Mar 14 16:45:30 2017 -0400
@@ -2,7 +2,7 @@
 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd">
   <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0">
     <cvList count="2">
-      <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="3.79.0" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
+      <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="4.0.1" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
       <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/>
     </cvList>
     <fileDescription>
@@ -20,7 +20,7 @@
           <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="4efa13a2795731b5f2a1ff1c463daf0d24b9a9d9"/>
         </sourceFile>
         <sourceFile id="small-peakpicking-cwt-allMS.mzML" name="small-peakpicking-cwt-allMS.mzML" location="file:///">
-          <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="8af1e376b6ed33679f7fcf965a5e7fd6b1bf77b7"/>
+          <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="2d5cdd239d18de37386cf9409e30693767b16f82"/>
         </sourceFile>
       </sourceFileList>
     </fileDescription>
@@ -37,7 +37,7 @@
       <software id="pwiz" version="3.0.8981">
         <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
       </software>
-      <software id="pwiz_3.0.8990" version="3.0.8990">
+      <software id="pwiz_3.0.9987" version="3.0.9987">
         <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
       </software>
     </softwareList>
@@ -82,10 +82,10 @@
         </processingMethod>
       </dataProcessing>
       <dataProcessing id="pwiz_Reader_conversion">
-        <processingMethod order="0" softwareRef="pwiz_3.0.8990">
+        <processingMethod order="0" softwareRef="pwiz_3.0.9987">
           <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/>
         </processingMethod>
-        <processingMethod order="1" softwareRef="pwiz_3.0.8990">
+        <processingMethod order="1" softwareRef="pwiz_3.0.9987">
           <cvParam cvRef="MS" accession="MS:1000035" name="peak picking" value=""/>
         </processingMethod>
       </dataProcessing>
@@ -2156,45 +2156,45 @@
   </mzML>
   <indexList count="2">
     <index name="spectrum">
-      <offset idRef="controllerType=0 controllerNumber=1 scan=3">5578</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=4">14149</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=5">26007</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=6">36523</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=7">45892</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=10">56060</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=11">65084</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=12">76555</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=13">85838</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=14">96109</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=17">105592</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=18">114807</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=19">126097</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=20">135567</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=21">145103</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=24">155961</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=25">165178</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=26">176662</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=27">186811</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=28">196381</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=31">207131</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=32">218571</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=33">227942</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=34">237606</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=37">246474</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=38">255647</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=39">267932</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=40">277304</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=41">288094</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=44">298054</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=45">307439</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=46">319299</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=47">329078</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=48">338483</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=3">5577</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=4">14148</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=5">26006</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=6">36522</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=7">45891</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=10">56059</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=11">65083</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=12">76554</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=13">85837</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=14">96108</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=17">105591</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=18">114806</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=19">126096</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=20">135566</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=21">145102</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=24">155960</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=25">165177</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=26">176661</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=27">186810</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=28">196380</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=31">207130</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=32">218570</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=33">227941</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=34">237605</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=37">246473</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=38">255646</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=39">267931</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=40">277303</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=41">288093</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=44">298053</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=45">307438</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=46">319298</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=47">329077</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=48">338482</offset>
     </index>
     <index name="chromatogram">
-      <offset idRef="TIC">347713</offset>
+      <offset idRef="TIC">347712</offset>
     </index>
   </indexList>
-  <indexListOffset>349663</indexListOffset>
-  <fileChecksum>e47c8b99f8a38261a6a99445767638bda0d81200</fileChecksum>
+  <indexListOffset>349662</indexListOffset>
+  <fileChecksum>a9a8b2244bb3a277a399a710506652c0968ed670</fileChecksum>
 </indexedmzML>