diff msconvert_win.xml @ 0:f8cf3be564bb draft default tip

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/msconvert_win.xml	Fri Apr 08 16:09:02 2016 -0400
@@ -0,0 +1,36 @@
+<tool id="msconvert_win" name="msconvert (vendor support)" version="@VERSION@.0">
+  <description>Convert and/or filter mass spectrometry files (with vendor support on Windows)</description>
+
+  <macros>
+    <import>msconvert_macros.xml</import>
+  </macros>
+
+  <expand macro="msconvertCommand" />
+
+  <inputs>
+    <!-- TODO: add Bruker, Waters, Agilent types -->
+    <param format="mzml,mzxml,mz5,mgf,wiff,raw" name="input" type="data" label="Input unrefined MS data" />
+
+    <expand macro="msconvertInputParameters" />
+  </inputs>
+
+  <expand macro="msconvertOutput" />
+
+  <tests>
+    <expand macro="msconvert_tests" />
+
+    <test>
+      <param name="input" value="small.raw" />
+      <param name="output_type" value="mgf" />
+      <param name="pick_peaks" value="true" />
+      <param name="pick_peaks_algorithm" value="vendor" />
+      <param name="pick_peaks_ms_levels" value="1" />
+      <output name="output" file="small-peakpicking-vendor-ms1.mgf" />
+    </test>
+
+  </tests>
+  <help>
+    <expand macro="msconvert_help" />
+  </help>
+  <expand macro="citations" />
+</tool>