comparison msgfplus.xml @ 1:797c755b9e74 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty

0:ee56530a559f

<tool id="msgfplus" name="MS-GF+" version="0.1">
    <description>
        Identifies peptides in tandem mass spectra using the MS-GF+ search engine.
    </description>
    <requirements>
        <requirement type="package" version="10089">msgfplus</requirement>
        <environment_variable name="LC_ALL" action="set_to">C</environment_variable>        
    </requirements>
    <stdio>
        <exit_code range="1:" level="fatal" description="Job Failed" />
        <regex match="java.*Exception" level="fatal" description="Java Exception"/> 
        <regex match="Could not create the Java virtual machine" level="fatal" description="JVM Error"/>

1:797c755b9e74

<tool id="msgfplus" name="MS-GF+" version="0.1">
    <description>
        Identifies peptides in tandem mass spectra using the MS-GF+ search engine.
    </description>
    <requirements>
        <requirement type="package" version="v10089">msgfplus</requirement>
        <environment_variable name="LC_ALL" action="set_to">C</environment_variable>
    </requirements>
    <stdio>
        <exit_code range="1:" level="fatal" description="Job Failed" />
        <regex match="java.*Exception" level="fatal" description="Java Exception"/> 
        <regex match="Could not create the Java virtual machine" level="fatal" description="JVM Error"/>