Mercurial > repos > galaxyp > msgfplus
view test-data/201208-378803-msgf_20161026-2mmu-tryptic-many_mods.mzid @ 2:058a2ab1d462 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6
author | galaxyp |
---|---|
date | Wed, 07 Dec 2016 16:43:17 -0500 |
parents | |
children | 09e0ae6f661b |
line wrap: on
line source
<?xml version="1.0" encoding="UTF-8"?> <MzIdentML xmlns="http://psidev.info/psi/pi/mzIdentML/1.1" id="MS-GF+" version="1.1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd" creationDate="2016-11-10T20:39:33"> <cvList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> <cv fullName="PSI-MS" version="3.30.0" uri="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo" id="PSI-MS"/> <cv fullName="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" id="UNIMOD"/> <cv fullName="UNIT-ONTOLOGY" uri="https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo" id="UO"/> </cvList> <AnalysisSoftwareList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> <AnalysisSoftware version="Release (v2016.10.26)" id="ID_software" name="MS-GF+"> <SoftwareName> <cvParam cvRef="PSI-MS" accession="MS:1002048" name="MS-GF+"/> </SoftwareName> </AnalysisSoftware> </AnalysisSoftwareList> <SequenceCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> <DBSequence length="206" searchDatabase_ref="SearchDB_1" accession="gi|528953238|ref|XP_005208082.1|" id="DBSeq23283"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|528953238|ref|XP_005208082.1| PREDICTED: alpha-S1-casein isoform X3 [Bos taurus]"/> </DBSequence> <DBSequence length="206" searchDatabase_ref="SearchDB_1" accession="XXX_gi|528953238|ref|XP_005208082.1|" id="DBSeq79258"/> <DBSequence length="811" searchDatabase_ref="SearchDB_1" accession="XXX_gi|528968106|ref|XP_005212568.1|" id="DBSeq84448"/> <DBSequence length="811" searchDatabase_ref="SearchDB_1" accession="gi|528968106|ref|XP_005212568.1|" id="DBSeq28473"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|528968106|ref|XP_005212568.1| PREDICTED: exocyst complex component 6B isoform X2 [Bos taurus]"/> </DBSequence> <DBSequence length="7610" searchDatabase_ref="SearchDB_1" accession="XXX_gi|528944676|ref|XP_005204734.1|" id="DBSeq65480"/> <DBSequence length="5498" searchDatabase_ref="SearchDB_1" accession="XXX_gi|528944678|ref|XP_005204735.1|" id="DBSeq73091"/> <DBSequence length="5422" searchDatabase_ref="SearchDB_1" accession="XXX_gi|219804516|ref|NP_001137332.1|" id="DBSeq94489"/> <DBSequence length="7610" searchDatabase_ref="SearchDB_1" accession="gi|528944676|ref|XP_005204734.1|" id="DBSeq9505"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|528944676|ref|XP_005204734.1| PREDICTED: microtubule-actin cross-linking factor 1 isoform X1 [Bos taurus]"/> </DBSequence> <DBSequence length="5498" searchDatabase_ref="SearchDB_1" accession="gi|528944678|ref|XP_005204735.1|" id="DBSeq17116"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|528944678|ref|XP_005204735.1| PREDICTED: microtubule-actin cross-linking factor 1 isoform X2 [Bos taurus]"/> </DBSequence> <DBSequence length="5422" searchDatabase_ref="SearchDB_1" accession="gi|219804516|ref|NP_001137332.1|" id="DBSeq38514"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|219804516|ref|NP_001137332.1| microtubule-actin cross-linking factor 1 [Bos taurus]"/> </DBSequence> <DBSequence length="607" searchDatabase_ref="SearchDB_1" accession="gi|30794280|ref|NP_851335.1|" id="DBSeq43937"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|30794280|ref|NP_851335.1| serum albumin precursor [Bos taurus]"/> </DBSequence> <DBSequence length="607" searchDatabase_ref="SearchDB_1" accession="XXX_gi|30794280|ref|NP_851335.1|" id="DBSeq99912"/> <DBSequence length="1099" searchDatabase_ref="SearchDB_1" accession="XXX_gi|358414198|ref|XP_002700672.2|" id="DBSeq104353"/> <DBSequence length="1131" searchDatabase_ref="SearchDB_1" accession="XXX_gi|528966552|ref|XP_005211956.1|" id="DBSeq107227"/> <DBSequence length="1099" searchDatabase_ref="SearchDB_1" accession="XXX_gi|528966554|ref|XP_005211957.1|" id="DBSeq108359"/> <DBSequence length="1099" searchDatabase_ref="SearchDB_1" accession="XXX_gi|297479727|ref|XP_002690982.1|" id="DBSeq109459"/> <DBSequence length="1099" searchDatabase_ref="SearchDB_1" accession="gi|358414198|ref|XP_002700672.2|" id="DBSeq48378"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|358414198|ref|XP_002700672.2| PREDICTED: LOW QUALITY PROTEIN: solute carrier family 12 member 1 [Bos taurus]"/> </DBSequence> <DBSequence length="1131" searchDatabase_ref="SearchDB_1" accession="gi|528966552|ref|XP_005211956.1|" id="DBSeq51252"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|528966552|ref|XP_005211956.1| PREDICTED: solute carrier family 12 member 1 isoform X2 [Bos taurus]"/> </DBSequence> <DBSequence length="1099" searchDatabase_ref="SearchDB_1" accession="gi|528966554|ref|XP_005211957.1|" id="DBSeq52384"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|528966554|ref|XP_005211957.1| PREDICTED: solute carrier family 12 member 1 isoform X3 [Bos taurus]"/> </DBSequence> <DBSequence length="1099" searchDatabase_ref="SearchDB_1" accession="gi|297479727|ref|XP_002690982.1|" id="DBSeq53484"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|297479727|ref|XP_002690982.1| PREDICTED: solute carrier family 12 member 1 isoform X1 [Bos taurus]"/> </DBSequence> <DBSequence length="305" searchDatabase_ref="SearchDB_1" accession="XXX_gi|528995061|ref|XP_005220351.1|" id="DBSeq89236"/> <DBSequence length="305" searchDatabase_ref="SearchDB_1" accession="XXX_gi|528995063|ref|XP_005220352.1|" id="DBSeq89542"/> <DBSequence length="305" searchDatabase_ref="SearchDB_1" accession="XXX_gi|27806505|ref|NP_776558.1|" id="DBSeq100520"/> <DBSequence length="690" searchDatabase_ref="SearchDB_1" accession="XXX_gi|329665078|ref|NP_001193236.1|" id="DBSeq101624"/> <DBSequence length="305" searchDatabase_ref="SearchDB_1" accession="gi|528995061|ref|XP_005220351.1|" id="DBSeq33261"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|528995061|ref|XP_005220351.1| PREDICTED: polyubiquitin-B isoform X1 [Bos taurus]"/> </DBSequence> <DBSequence length="305" searchDatabase_ref="SearchDB_1" accession="gi|528995063|ref|XP_005220352.1|" id="DBSeq33567"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|528995063|ref|XP_005220352.1| PREDICTED: polyubiquitin-B isoform X2 [Bos taurus]"/> </DBSequence> <DBSequence length="305" searchDatabase_ref="SearchDB_1" accession="gi|27806505|ref|NP_776558.1|" id="DBSeq44545"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|27806505|ref|NP_776558.1| polyubiquitin-B [Bos taurus]"/> </DBSequence> <DBSequence length="690" searchDatabase_ref="SearchDB_1" accession="gi|329665078|ref|NP_001193236.1|" id="DBSeq45649"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|329665078|ref|NP_001193236.1| polyubiquitin-C [Bos taurus]"/> </DBSequence> <DBSequence length="588" searchDatabase_ref="SearchDB_1" accession="gi|528908812|ref|XP_609847.5|" id="DBSeq3312"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|528908812|ref|XP_609847.5| PREDICTED: zinc finger protein 169 isoform X6 [Bos taurus]"/> </DBSequence> <DBSequence length="588" searchDatabase_ref="SearchDB_1" accession="gi|528959657|ref|XP_002689899.2|" id="DBSeq27068"> <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi|528959657|ref|XP_002689899.2| PREDICTED: zinc finger protein 169 isoform X1 [Bos taurus]"/> </DBSequence> <Peptide id="Pep_130--17128+16EAESISSSEQKHIQK"> <PeptideSequence>QMEAESISSSEQKHIQK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="0" monoisotopicMassDelta="-17.026549105"> <cvParam cvRef="UNIMOD" accession="UNIMOD:28" name="Gln->pyro-Glu"/> </Modification> <Modification location="2" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="13" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="17" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_130--17IHKQESSSISEAE128+16QK"> <PeptideSequence>QIHKQESSSISEAEMQK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="0" monoisotopicMassDelta="-17.026549105"> <cvParam cvRef="UNIMOD" accession="UNIMOD:28" name="Gln->pyro-Glu"/> </Modification> <Modification location="4" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="15" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="17" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_RFQAF128+16NNKRSTDK128+16K"> <PeptideSequence>RFQAFMNNKRSTDKMK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="6" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="9" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="14" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="15" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="16" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_129+16KDTSRKNN128+16FAQFRK"> <PeptideSequence>MKDTSRKNNMFAQFRK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="1" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="2" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="7" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="10" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="16" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_RDDLLRQLLK"> <PeptideSequence>RDDLLRQLLK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="10" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_LLQRLLDDRK"> <PeptideSequence>LLQRLLDDRK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="10" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_NE128+16A128+16CGSNVRQK"> <PeptideSequence>NEMAMCGSNVRQK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="3" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="5" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="6" monoisotopicMassDelta="57.021463735"> <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/> </Modification> <Modification location="13" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_QRVNSGC128+16A128+16ENK"> <PeptideSequence>QRVNSGCMAMENK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="7" monoisotopicMassDelta="57.021463735"> <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/> </Modification> <Modification location="8" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="10" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="13" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_130--17ESSSISEAE128+16QK"> <PeptideSequence>QESSSISEAEMQK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="0" monoisotopicMassDelta="-17.026549105"> <cvParam cvRef="UNIMOD" accession="UNIMOD:28" name="Gln->pyro-Glu"/> </Modification> <Modification location="11" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="13" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_130--17128+16EAESISSSEQK"> <PeptideSequence>QMEAESISSSEQK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="0" monoisotopicMassDelta="-17.026549105"> <cvParam cvRef="UNIMOD" accession="UNIMOD:28" name="Gln->pyro-Glu"/> </Modification> <Modification location="2" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="13" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_LQKVAHDLMEIEGEPAPDRK"> <PeptideSequence>LQKVAHDLMEIEGEPAPDRK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="3" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="20" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_RDPAPEGEIEMLDHAVKQLK"> <PeptideSequence>RDPAPEGEIEMLDHAVKQLK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="17" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="20" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_ECCDKPLLEK"> <PeptideSequence>ECCDKPLLEK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="2" monoisotopicMassDelta="57.021463735"> <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/> </Modification> <Modification location="3" monoisotopicMassDelta="57.021463735"> <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/> </Modification> <Modification location="5" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="10" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_ELLPKDCCEK"> <PeptideSequence>ELLPKDCCEK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="5" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="7" monoisotopicMassDelta="57.021463735"> <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/> </Modification> <Modification location="8" monoisotopicMassDelta="57.021463735"> <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/> </Modification> <Modification location="10" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_VASLRETYGD128+16ADCCEK"> <PeptideSequence>VASLRETYGDMADCCEK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="11" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="14" monoisotopicMassDelta="57.021463735"> <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/> </Modification> <Modification location="15" monoisotopicMassDelta="57.021463735"> <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/> </Modification> <Modification location="17" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_ECCDA128+16DGYTERLSAVK"> <PeptideSequence>ECCDAMDGYTERLSAVK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="2" monoisotopicMassDelta="57.021463735"> <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/> </Modification> <Modification location="3" monoisotopicMassDelta="57.021463735"> <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/> </Modification> <Modification location="6" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="17" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_LPQGYHPNDVEEEWGK"> <PeptideSequence>LPQGYHPNDVEEEWGK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="16" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_GWEEEVDNPHYGQPLK"> <PeptideSequence>GWEEEVDNPHYGQPLK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="16" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_ILWAQKKAMGSNMEKVCLK"> <PeptideSequence>ILWAQKKAMGSNMEKVCLK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="6" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="7" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="15" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="17" monoisotopicMassDelta="57.021463735"> <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/> </Modification> <Modification location="19" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_LCVKEMNSGMAKKQAWLIK"> <PeptideSequence>LCVKEMNSGMAKKQAWLIK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="2" monoisotopicMassDelta="57.021463735"> <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/> </Modification> <Modification location="4" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="12" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="13" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="19" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_S128+16ENEDKEETVAK"> <PeptideSequence>SMENEDKEETVAK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="2" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="7" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="13" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_AVTEEKDENE128+16SK"> <PeptideSequence>AVTEEKDENEMSK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="6" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="11" monoisotopicMassDelta="15.99491463"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </Modification> <Modification location="13" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_VFIQMGGRLRLVLHLTSEK"> <PeptideSequence>VFIQMGGRLRLVLHLTSEK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="19" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_ESTLHLVLRLRGGMQIFVK"> <PeptideSequence>ESTLHLVLRLRGGMQIFVK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="19" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_MAFRDVAVAFTQK"> <PeptideSequence>MAFRDVAVAFTQK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="13" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <Peptide id="Pep_130--17TVEAYSAAVQSQLQWMK"> <PeptideSequence>QTVEAYSAAVQSQLQWMK</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> <Modification location="0" monoisotopicMassDelta="-17.026549105"> <cvParam cvRef="UNIMOD" accession="UNIMOD:28" name="Gln->pyro-Glu"/> </Modification> <Modification location="18" monoisotopicMassDelta="144.102063"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </Modification> </Peptide> <PeptideEvidence dBSequence_ref="DBSeq23283" peptide_ref="Pep_130--17128+16EAESISSSEQKHIQK" start="74" end="90" pre="K" post="E" isDecoy="false" id="PepEv_23356_130--17128+16EAESISSSEQKHIQK_74"/> <PeptideEvidence dBSequence_ref="DBSeq79258" peptide_ref="Pep_130--17IHKQESSSISEAE128+16QK" start="118" end="134" pre="K" post="I" isDecoy="true" id="PepEv_79375_130--17IHKQESSSISEAE128+16QK_118"/> <PeptideEvidence dBSequence_ref="DBSeq84448" peptide_ref="Pep_RFQAF128+16NNKRSTDK128+16K" start="27" end="42" pre="K" post="E" isDecoy="true" id="PepEv_84474_RFQAF128+16NNKRSTDK128+16K_27"/> <PeptideEvidence dBSequence_ref="DBSeq28473" peptide_ref="Pep_129+16KDTSRKNN128+16FAQFRK" start="771" end="786" pre="K" post="N" isDecoy="false" id="PepEv_29243_129+16KDTSRKNN128+16FAQFRK_771"/> <PeptideEvidence dBSequence_ref="DBSeq65480" peptide_ref="Pep_RDDLLRQLLK" start="2171" end="2180" pre="K" post="Q" isDecoy="true" id="PepEv_67650_RDDLLRQLLK_2171"/> <PeptideEvidence dBSequence_ref="DBSeq73091" peptide_ref="Pep_RDDLLRQLLK" start="2101" end="2110" pre="K" post="Q" isDecoy="true" id="PepEv_75191_RDDLLRQLLK_2101"/> <PeptideEvidence dBSequence_ref="DBSeq94489" peptide_ref="Pep_RDDLLRQLLK" start="2101" end="2110" pre="K" post="Q" isDecoy="true" id="PepEv_96589_RDDLLRQLLK_2101"/> <PeptideEvidence dBSequence_ref="DBSeq9505" peptide_ref="Pep_LLQRLLDDRK" start="5432" end="5441" pre="K" post="A" isDecoy="false" id="PepEv_14936_LLQRLLDDRK_5432"/> <PeptideEvidence dBSequence_ref="DBSeq17116" peptide_ref="Pep_LLQRLLDDRK" start="3390" end="3399" pre="K" post="A" isDecoy="false" id="PepEv_20505_LLQRLLDDRK_3390"/> <PeptideEvidence dBSequence_ref="DBSeq38514" peptide_ref="Pep_LLQRLLDDRK" start="3314" end="3323" pre="K" post="A" isDecoy="false" id="PepEv_41827_LLQRLLDDRK_3314"/> <PeptideEvidence dBSequence_ref="DBSeq65480" peptide_ref="Pep_NE128+16A128+16CGSNVRQK" start="2447" end="2459" pre="K" post="V" isDecoy="true" id="PepEv_67926_NE128+16A128+16CGSNVRQK_2447"/> <PeptideEvidence dBSequence_ref="DBSeq73091" peptide_ref="Pep_NE128+16A128+16CGSNVRQK" start="2377" end="2389" pre="K" post="V" isDecoy="true" id="PepEv_75467_NE128+16A128+16CGSNVRQK_2377"/> <PeptideEvidence dBSequence_ref="DBSeq94489" peptide_ref="Pep_NE128+16A128+16CGSNVRQK" start="2377" end="2389" pre="K" post="V" isDecoy="true" id="PepEv_96865_NE128+16A128+16CGSNVRQK_2377"/> <PeptideEvidence dBSequence_ref="DBSeq9505" peptide_ref="Pep_QRVNSGC128+16A128+16ENK" start="5153" end="5165" pre="K" post="L" isDecoy="false" id="PepEv_14657_QRVNSGC128+16A128+16ENK_5153"/> <PeptideEvidence dBSequence_ref="DBSeq17116" peptide_ref="Pep_QRVNSGC128+16A128+16ENK" start="3111" end="3123" pre="K" post="L" isDecoy="false" id="PepEv_20226_QRVNSGC128+16A128+16ENK_3111"/> <PeptideEvidence dBSequence_ref="DBSeq38514" peptide_ref="Pep_QRVNSGC128+16A128+16ENK" start="3035" end="3047" pre="K" post="L" isDecoy="false" id="PepEv_41548_QRVNSGC128+16A128+16ENK_3035"/> <PeptideEvidence dBSequence_ref="DBSeq79258" peptide_ref="Pep_130--17ESSSISEAE128+16QK" start="122" end="134" pre="K" post="I" isDecoy="true" id="PepEv_79379_130--17ESSSISEAE128+16QK_122"/> <PeptideEvidence dBSequence_ref="DBSeq23283" peptide_ref="Pep_130--17128+16EAESISSSEQK" start="74" end="86" pre="K" post="H" isDecoy="false" id="PepEv_23356_130--17128+16EAESISSSEQK_74"/> <PeptideEvidence dBSequence_ref="DBSeq9505" peptide_ref="Pep_LQKVAHDLMEIEGEPAPDRK" start="4104" end="4123" pre="K" post="H" isDecoy="false" id="PepEv_13608_LQKVAHDLMEIEGEPAPDRK_4104"/> <PeptideEvidence dBSequence_ref="DBSeq17116" peptide_ref="Pep_LQKVAHDLMEIEGEPAPDRK" start="2062" end="2081" pre="K" post="H" isDecoy="false" id="PepEv_19177_LQKVAHDLMEIEGEPAPDRK_2062"/> <PeptideEvidence dBSequence_ref="DBSeq38514" peptide_ref="Pep_LQKVAHDLMEIEGEPAPDRK" start="1986" end="2005" pre="K" post="H" isDecoy="false" id="PepEv_40499_LQKVAHDLMEIEGEPAPDRK_1986"/> <PeptideEvidence dBSequence_ref="DBSeq65480" peptide_ref="Pep_RDPAPEGEIEMLDHAVKQLK" start="3489" end="3508" pre="K" post="E" isDecoy="true" id="PepEv_68968_RDPAPEGEIEMLDHAVKQLK_3489"/> <PeptideEvidence dBSequence_ref="DBSeq73091" peptide_ref="Pep_RDPAPEGEIEMLDHAVKQLK" start="3419" end="3438" pre="K" post="E" isDecoy="true" id="PepEv_76509_RDPAPEGEIEMLDHAVKQLK_3419"/> <PeptideEvidence dBSequence_ref="DBSeq94489" peptide_ref="Pep_RDPAPEGEIEMLDHAVKQLK" start="3419" end="3438" pre="K" post="E" isDecoy="true" id="PepEv_97907_RDPAPEGEIEMLDHAVKQLK_3419"/> <PeptideEvidence dBSequence_ref="DBSeq43937" peptide_ref="Pep_ECCDKPLLEK" start="300" end="309" pre="K" post="S" isDecoy="false" id="PepEv_44236_ECCDKPLLEK_300"/> <PeptideEvidence dBSequence_ref="DBSeq99912" peptide_ref="Pep_ELLPKDCCEK" start="300" end="309" pre="K" post="L" isDecoy="true" id="PepEv_100211_ELLPKDCCEK_300"/> <PeptideEvidence dBSequence_ref="DBSeq43937" peptide_ref="Pep_VASLRETYGD128+16ADCCEK" start="101" end="117" pre="K" post="Q" isDecoy="false" id="PepEv_44037_VASLRETYGD128+16ADCCEK_101"/> <PeptideEvidence dBSequence_ref="DBSeq99912" peptide_ref="Pep_ECCDA128+16DGYTERLSAVK" start="492" end="508" pre="K" post="C" isDecoy="true" id="PepEv_100403_ECCDA128+16DGYTERLSAVK_492"/> <PeptideEvidence dBSequence_ref="DBSeq9505" peptide_ref="Pep_LPQGYHPNDVEEEWGK" start="468" end="483" pre="K" post="L" isDecoy="false" id="PepEv_9972_LPQGYHPNDVEEEWGK_468"/> <PeptideEvidence dBSequence_ref="DBSeq17116" peptide_ref="Pep_LPQGYHPNDVEEEWGK" start="468" end="483" pre="K" post="L" isDecoy="false" id="PepEv_17583_LPQGYHPNDVEEEWGK_468"/> <PeptideEvidence dBSequence_ref="DBSeq38514" peptide_ref="Pep_LPQGYHPNDVEEEWGK" start="392" end="407" pre="K" post="L" isDecoy="false" id="PepEv_38905_LPQGYHPNDVEEEWGK_392"/> <PeptideEvidence dBSequence_ref="DBSeq65480" peptide_ref="Pep_GWEEEVDNPHYGQPLK" start="7129" end="7144" pre="K" post="I" isDecoy="true" id="PepEv_72608_GWEEEVDNPHYGQPLK_7129"/> <PeptideEvidence dBSequence_ref="DBSeq73091" peptide_ref="Pep_GWEEEVDNPHYGQPLK" start="5017" end="5032" pre="K" post="I" isDecoy="true" id="PepEv_78107_GWEEEVDNPHYGQPLK_5017"/> <PeptideEvidence dBSequence_ref="DBSeq94489" peptide_ref="Pep_GWEEEVDNPHYGQPLK" start="5017" end="5032" pre="K" post="I" isDecoy="true" id="PepEv_99505_GWEEEVDNPHYGQPLK_5017"/> <PeptideEvidence dBSequence_ref="DBSeq104353" peptide_ref="Pep_ILWAQKKAMGSNMEKVCLK" start="360" end="378" pre="K" post="R" isDecoy="true" id="PepEv_104712_ILWAQKKAMGSNMEKVCLK_360"/> <PeptideEvidence dBSequence_ref="DBSeq107227" peptide_ref="Pep_ILWAQKKAMGSNMEKVCLK" start="360" end="378" pre="K" post="R" isDecoy="true" id="PepEv_107586_ILWAQKKAMGSNMEKVCLK_360"/> <PeptideEvidence dBSequence_ref="DBSeq108359" peptide_ref="Pep_ILWAQKKAMGSNMEKVCLK" start="360" end="378" pre="K" post="R" isDecoy="true" id="PepEv_108718_ILWAQKKAMGSNMEKVCLK_360"/> <PeptideEvidence dBSequence_ref="DBSeq109459" peptide_ref="Pep_ILWAQKKAMGSNMEKVCLK" start="360" end="378" pre="K" post="R" isDecoy="true" id="PepEv_109818_ILWAQKKAMGSNMEKVCLK_360"/> <PeptideEvidence dBSequence_ref="DBSeq48378" peptide_ref="Pep_LCVKEMNSGMAKKQAWLIK" start="723" end="741" pre="K" post="N" isDecoy="false" id="PepEv_49100_LCVKEMNSGMAKKQAWLIK_723"/> <PeptideEvidence dBSequence_ref="DBSeq51252" peptide_ref="Pep_LCVKEMNSGMAKKQAWLIK" start="755" end="773" pre="K" post="N" isDecoy="false" id="PepEv_52006_LCVKEMNSGMAKKQAWLIK_755"/> <PeptideEvidence dBSequence_ref="DBSeq52384" peptide_ref="Pep_LCVKEMNSGMAKKQAWLIK" start="723" end="741" pre="K" post="N" isDecoy="false" id="PepEv_53106_LCVKEMNSGMAKKQAWLIK_723"/> <PeptideEvidence dBSequence_ref="DBSeq53484" peptide_ref="Pep_LCVKEMNSGMAKKQAWLIK" start="723" end="741" pre="K" post="N" isDecoy="false" id="PepEv_54206_LCVKEMNSGMAKKQAWLIK_723"/> <PeptideEvidence dBSequence_ref="DBSeq9505" peptide_ref="Pep_S128+16ENEDKEETVAK" start="1113" end="1125" pre="K" post="M" isDecoy="false" id="PepEv_10617_S128+16ENEDKEETVAK_1113"/> <PeptideEvidence dBSequence_ref="DBSeq17116" peptide_ref="Pep_S128+16ENEDKEETVAK" start="1111" end="1123" pre="K" post="M" isDecoy="false" id="PepEv_18226_S128+16ENEDKEETVAK_1111"/> <PeptideEvidence dBSequence_ref="DBSeq38514" peptide_ref="Pep_S128+16ENEDKEETVAK" start="1035" end="1047" pre="K" post="M" isDecoy="false" id="PepEv_39548_S128+16ENEDKEETVAK_1035"/> <PeptideEvidence dBSequence_ref="DBSeq65480" peptide_ref="Pep_AVTEEKDENE128+16SK" start="6487" end="6499" pre="K" post="L" isDecoy="true" id="PepEv_71966_AVTEEKDENE128+16SK_6487"/> <PeptideEvidence dBSequence_ref="DBSeq73091" peptide_ref="Pep_AVTEEKDENE128+16SK" start="4377" end="4389" pre="K" post="L" isDecoy="true" id="PepEv_77467_AVTEEKDENE128+16SK_4377"/> <PeptideEvidence dBSequence_ref="DBSeq94489" peptide_ref="Pep_AVTEEKDENE128+16SK" start="4377" end="4389" pre="K" post="L" isDecoy="true" id="PepEv_98865_AVTEEKDENE128+16SK_4377"/> <PeptideEvidence dBSequence_ref="DBSeq89236" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="73" end="91" pre="K" post="Q" isDecoy="true" id="PepEv_89308_VFIQMGGRLRLVLHLTSEK_73"/> <PeptideEvidence dBSequence_ref="DBSeq89236" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="149" end="167" pre="K" post="Q" isDecoy="true" id="PepEv_89384_VFIQMGGRLRLVLHLTSEK_149"/> <PeptideEvidence dBSequence_ref="DBSeq89236" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="225" end="243" pre="K" post="Q" isDecoy="true" id="PepEv_89460_VFIQMGGRLRLVLHLTSEK_225"/> <PeptideEvidence dBSequence_ref="DBSeq89542" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="73" end="91" pre="K" post="Q" isDecoy="true" id="PepEv_89614_VFIQMGGRLRLVLHLTSEK_73"/> <PeptideEvidence dBSequence_ref="DBSeq89542" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="149" end="167" pre="K" post="Q" isDecoy="true" id="PepEv_89690_VFIQMGGRLRLVLHLTSEK_149"/> <PeptideEvidence dBSequence_ref="DBSeq89542" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="225" end="243" pre="K" post="Q" isDecoy="true" id="PepEv_89766_VFIQMGGRLRLVLHLTSEK_225"/> <PeptideEvidence dBSequence_ref="DBSeq100520" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="73" end="91" pre="K" post="Q" isDecoy="true" id="PepEv_100592_VFIQMGGRLRLVLHLTSEK_73"/> <PeptideEvidence dBSequence_ref="DBSeq100520" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="149" end="167" pre="K" post="Q" isDecoy="true" id="PepEv_100668_VFIQMGGRLRLVLHLTSEK_149"/> <PeptideEvidence dBSequence_ref="DBSeq100520" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="225" end="243" pre="K" post="Q" isDecoy="true" id="PepEv_100744_VFIQMGGRLRLVLHLTSEK_225"/> <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="78" end="96" pre="K" post="Q" isDecoy="true" id="PepEv_101701_VFIQMGGRLRLVLHLTSEK_78"/> <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="154" end="172" pre="K" post="Q" isDecoy="true" id="PepEv_101777_VFIQMGGRLRLVLHLTSEK_154"/> <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="230" end="248" pre="K" post="Q" isDecoy="true" id="PepEv_101853_VFIQMGGRLRLVLHLTSEK_230"/> <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="306" end="324" pre="K" post="Q" isDecoy="true" id="PepEv_101929_VFIQMGGRLRLVLHLTSEK_306"/> <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="382" end="400" pre="K" post="Q" isDecoy="true" id="PepEv_102005_VFIQMGGRLRLVLHLTSEK_382"/> <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="458" end="476" pre="K" post="Q" isDecoy="true" id="PepEv_102081_VFIQMGGRLRLVLHLTSEK_458"/> <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="534" end="552" pre="K" post="Q" isDecoy="true" id="PepEv_102157_VFIQMGGRLRLVLHLTSEK_534"/> <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="610" end="628" pre="K" post="Q" isDecoy="true" id="PepEv_102233_VFIQMGGRLRLVLHLTSEK_610"/> <PeptideEvidence dBSequence_ref="DBSeq33261" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="64" end="82" pre="K" post="T" isDecoy="false" id="PepEv_33324_ESTLHLVLRLRGGMQIFVK_64"/> <PeptideEvidence dBSequence_ref="DBSeq33261" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="140" end="158" pre="K" post="T" isDecoy="false" id="PepEv_33400_ESTLHLVLRLRGGMQIFVK_140"/> <PeptideEvidence dBSequence_ref="DBSeq33261" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="216" end="234" pre="K" post="T" isDecoy="false" id="PepEv_33476_ESTLHLVLRLRGGMQIFVK_216"/> <PeptideEvidence dBSequence_ref="DBSeq33567" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="64" end="82" pre="K" post="T" isDecoy="false" id="PepEv_33630_ESTLHLVLRLRGGMQIFVK_64"/> <PeptideEvidence dBSequence_ref="DBSeq33567" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="140" end="158" pre="K" post="T" isDecoy="false" id="PepEv_33706_ESTLHLVLRLRGGMQIFVK_140"/> <PeptideEvidence dBSequence_ref="DBSeq33567" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="216" end="234" pre="K" post="T" isDecoy="false" id="PepEv_33782_ESTLHLVLRLRGGMQIFVK_216"/> <PeptideEvidence dBSequence_ref="DBSeq44545" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="64" end="82" pre="K" post="T" isDecoy="false" id="PepEv_44608_ESTLHLVLRLRGGMQIFVK_64"/> <PeptideEvidence dBSequence_ref="DBSeq44545" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="140" end="158" pre="K" post="T" isDecoy="false" id="PepEv_44684_ESTLHLVLRLRGGMQIFVK_140"/> <PeptideEvidence dBSequence_ref="DBSeq44545" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="216" end="234" pre="K" post="T" isDecoy="false" id="PepEv_44760_ESTLHLVLRLRGGMQIFVK_216"/> <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="64" end="82" pre="K" post="T" isDecoy="false" id="PepEv_45712_ESTLHLVLRLRGGMQIFVK_64"/> <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="140" end="158" pre="K" post="T" isDecoy="false" id="PepEv_45788_ESTLHLVLRLRGGMQIFVK_140"/> <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="216" end="234" pre="K" post="T" isDecoy="false" id="PepEv_45864_ESTLHLVLRLRGGMQIFVK_216"/> <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="292" end="310" pre="K" post="T" isDecoy="false" id="PepEv_45940_ESTLHLVLRLRGGMQIFVK_292"/> <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="368" end="386" pre="K" post="T" isDecoy="false" id="PepEv_46016_ESTLHLVLRLRGGMQIFVK_368"/> <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="444" end="462" pre="K" post="T" isDecoy="false" id="PepEv_46092_ESTLHLVLRLRGGMQIFVK_444"/> <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="520" end="538" pre="K" post="T" isDecoy="false" id="PepEv_46168_ESTLHLVLRLRGGMQIFVK_520"/> <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="596" end="614" pre="K" post="T" isDecoy="false" id="PepEv_46244_ESTLHLVLRLRGGMQIFVK_596"/> <PeptideEvidence dBSequence_ref="DBSeq3312" peptide_ref="Pep_MAFRDVAVAFTQK" start="1" end="13" pre="-" post="E" isDecoy="false" id="PepEv_3312_MAFRDVAVAFTQK_1"/> <PeptideEvidence dBSequence_ref="DBSeq27068" peptide_ref="Pep_MAFRDVAVAFTQK" start="1" end="13" pre="-" post="E" isDecoy="false" id="PepEv_27068_MAFRDVAVAFTQK_1"/> <PeptideEvidence dBSequence_ref="DBSeq9505" peptide_ref="Pep_130--17TVEAYSAAVQSQLQWMK" start="831" end="848" pre="K" post="Q" isDecoy="false" id="PepEv_10335_130--17TVEAYSAAVQSQLQWMK_831"/> <PeptideEvidence dBSequence_ref="DBSeq17116" peptide_ref="Pep_130--17TVEAYSAAVQSQLQWMK" start="831" end="848" pre="K" post="Q" isDecoy="false" id="PepEv_17946_130--17TVEAYSAAVQSQLQWMK_831"/> <PeptideEvidence dBSequence_ref="DBSeq38514" peptide_ref="Pep_130--17TVEAYSAAVQSQLQWMK" start="755" end="772" pre="K" post="Q" isDecoy="false" id="PepEv_39268_130--17TVEAYSAAVQSQLQWMK_755"/> </SequenceCollection> <AnalysisCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> <SpectrumIdentification spectrumIdentificationProtocol_ref="SearchProtocol_1" spectrumIdentificationList_ref="SI_LIST_1" id="SpecIdent_1"> <InputSpectra spectraData_ref="SID_1"/> <SearchDatabaseRef searchDatabase_ref="SearchDB_1"/> </SpectrumIdentification> </AnalysisCollection> <AnalysisProtocolCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> <SpectrumIdentificationProtocol analysisSoftware_ref="ID_software" id="SearchProtocol_1"> <SearchType> <cvParam cvRef="PSI-MS" accession="MS:1001083" name="ms-ms search"/> </SearchType> <AdditionalSearchParams> <cvParam cvRef="PSI-MS" accession="MS:1001211" name="parent mass type mono"/> <cvParam cvRef="PSI-MS" accession="MS:1001256" name="fragment mass type mono"/> <userParam name="TargetDecoyApproach" value="true"/> <userParam name="MinIsotopeError" value="-1"/> <userParam name="MaxIsotopeError" value="0"/> <userParam name="FragmentMethod" value="HCD"/> <userParam name="Instrument" value="QExactive"/> <userParam name="Protocol" value="iTRAQ"/> <userParam name="NumTolerableTermini" value="2"/> <userParam name="NumMatchesPerSpec" value="2"/> <userParam name="MaxNumModifications" value="2"/> <userParam name="MinPepLength" value="10"/> <userParam name="MaxPepLength" value="20"/> <userParam name="MinCharge" value="2"/> <userParam name="MaxCharge" value="6"/> <userParam name="ChargeCarrierMass" value="1.00727649"/> </AdditionalSearchParams> <ModificationParams> <SearchModification fixedMod="true" massDelta="57.021465" residues="C"> <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/> </SearchModification> <SearchModification fixedMod="true" massDelta="144.10207" residues="."> <SpecificityRules> <cvParam cvRef="PSI-MS" accession="MS:1001189" name="modification specificity N-term"/> </SpecificityRules> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </SearchModification> <SearchModification fixedMod="true" massDelta="144.10207" residues="K"> <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/> </SearchModification> <SearchModification fixedMod="false" massDelta="15.994915" residues="M"> <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/> </SearchModification> <SearchModification fixedMod="false" massDelta="-17.026548" residues="Q"> <SpecificityRules> <cvParam cvRef="PSI-MS" accession="MS:1001189" name="modification specificity N-term"/> </SpecificityRules> <cvParam cvRef="UNIMOD" accession="UNIMOD:28" name="Gln->pyro-Glu"/> </SearchModification> <SearchModification fixedMod="false" massDelta="-58.005478" residues="G"> <SpecificityRules> <cvParam cvRef="PSI-MS" accession="MS:1001190" name="modification specificity C-term"/> </SpecificityRules> <cvParam cvRef="UNIMOD" accession="UNIMOD:822" name="Gly-loss+Amide"/> </SearchModification> </ModificationParams> <Enzymes> <Enzyme semiSpecific="false" missedCleavages="1000" id="LysC"> <EnzymeName> <cvParam cvRef="PSI-MS" accession="MS:1001309" name="Lys-C"/> </EnzymeName> </Enzyme> </Enzymes> <ParentTolerance> <cvParam cvRef="PSI-MS" accession="MS:1001412" name="search tolerance plus value" value="0.02" unitAccession="UO:0000221" unitName="dalton" unitCvRef="UO"/> <cvParam cvRef="PSI-MS" accession="MS:1001413" name="search tolerance minus value" value="0.02" unitAccession="UO:0000221" unitName="dalton" unitCvRef="UO"/> </ParentTolerance> <Threshold> <cvParam cvRef="PSI-MS" accession="MS:1001494" name="no threshold"/> </Threshold> </SpectrumIdentificationProtocol> </AnalysisProtocolCollection> <DataCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> <Inputs> <SearchDatabase numDatabaseSequences="144" location="/private/tmp/tmp7jlHMg/job_working_directory/000/6/working/cow.protein.PRG2012-subset.fasta" id="SearchDB_1"> <FileFormat> <cvParam cvRef="PSI-MS" accession="MS:1001348" name="FASTA format"/> </FileFormat> <DatabaseName> <userParam name="cow.protein.PRG2012-subset.fasta"/> </DatabaseName> <cvParam cvRef="PSI-MS" accession="MS:1001197" name="DB composition target+decoy"/> <cvParam cvRef="PSI-MS" accession="MS:1001283" name="decoy DB accession regexp" value="^XXX"/> <cvParam cvRef="PSI-MS" accession="MS:1001195" name="decoy DB type reverse"/> </SearchDatabase> <SpectraData location="/private/tmp/tmp7jlHMg/job_working_directory/000/6/working/201208-378803.mzML" id="SID_1" name="201208-378803.mzML"> <FileFormat> <cvParam cvRef="PSI-MS" accession="MS:1000584" name="mzML file"/> </FileFormat> <SpectrumIDFormat> <cvParam cvRef="PSI-MS" accession="MS:1000770" name="WIFF nativeID format"/> </SpectrumIDFormat> </SpectraData> </Inputs> <AnalysisData> <SpectrumIdentificationList id="SI_LIST_1"> <FragmentationTable> <Measure id="Measure_MZ"> <cvParam cvRef="PSI-MS" accession="MS:1001225" name="product ion m/z" unitAccession="MS:1000040" unitName="m/z" unitCvRef="PSI-MS"/> </Measure> </FragmentationTable> <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1212 experiment=4" spectraData_ref="SID_1" id="SIR_52"> <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="598.3059692382812" calculatedMassToCharge="598.56005859375" peptide_ref="Pep_130--17128+16EAESISSSEQKHIQK" rank="1" passThreshold="true" id="SII_52_1"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_23356_130--17128+16EAESISSSEQKHIQK_74"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-18"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="68"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="3.735076E-5"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="1.5176361"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="0.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="0.0"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="443.0"/> </SpectrumIdentificationItem> <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="598.3059692382812" calculatedMassToCharge="598.56005859375" peptide_ref="Pep_130--17IHKQESSSISEAE128+16QK" rank="2" passThreshold="true" id="SII_52_2"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_79375_130--17IHKQESSSISEAE128+16QK_118"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-23"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="68"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="1.1482805E-4"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="4.6656933"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.004514673"/> <userParam name="NTermIonCurrentRatio" value="0.004514673"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="443.0"/> <userParam name="NumMatchedMainIons" value="1"/> <userParam name="MeanErrorAll" value="6.2688584"/> <userParam name="StdevErrorAll" value="0.0"/> <userParam name="MeanErrorTop7" value="6.2688584"/> <userParam name="StdevErrorTop7" value="0.0"/> <userParam name="MeanRelErrorAll" value="6.2688584"/> <userParam name="StdevRelErrorAll" value="0.0"/> <userParam name="MeanRelErrorTop7" value="6.2688584"/> <userParam name="StdevRelErrorTop7" value="0.0"/> </SpectrumIdentificationItem> </SpectrumIdentificationResult> <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1229 experiment=2" spectraData_ref="SID_1" id="SIR_90"> <SpectrumIdentificationItem chargeState="5" experimentalMassToCharge="522.6893920898438" calculatedMassToCharge="522.8875732421875" peptide_ref="Pep_RFQAF128+16NNKRSTDK128+16K" rank="1" passThreshold="true" id="SII_90_1"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_84474_RFQAF128+16NNKRSTDK128+16K_27"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-20"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="69"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="4.725597E-5"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="1.9131106"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="0.5"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="0.5"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="817.0"/> </SpectrumIdentificationItem> <SpectrumIdentificationItem chargeState="5" experimentalMassToCharge="522.6893920898438" calculatedMassToCharge="522.8875732421875" peptide_ref="Pep_129+16KDTSRKNN128+16FAQFRK" rank="2" passThreshold="true" id="SII_90_2"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_29243_129+16KDTSRKNN128+16FAQFRK_771"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-21"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="69"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="5.994706E-5"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="2.4268968"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="0.5"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="0.5"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="817.0"/> </SpectrumIdentificationItem> </SpectrumIdentificationResult> <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1214 experiment=5" spectraData_ref="SID_1" id="SIR_61"> <SpectrumIdentificationItem chargeState="3" experimentalMassToCharge="519.6590576171875" calculatedMassToCharge="519.994140625" peptide_ref="Pep_RDDLLRQLLK" rank="1" passThreshold="true" id="SII_61_1"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_67650_RDDLLRQLLK_2171"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_75191_RDDLLRQLLK_2101"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_96589_RDDLLRQLLK_2101"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-12"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="47"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="7.9344725E-5"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="3.1367352"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.004137931"/> <userParam name="NTermIonCurrentRatio" value="0.004137931"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="725.0"/> <userParam name="NumMatchedMainIons" value="1"/> <userParam name="MeanErrorAll" value="17.95661"/> <userParam name="StdevErrorAll" value="0.0"/> <userParam name="MeanErrorTop7" value="17.95661"/> <userParam name="StdevErrorTop7" value="0.0"/> <userParam name="MeanRelErrorAll" value="17.95661"/> <userParam name="StdevRelErrorAll" value="0.0"/> <userParam name="MeanRelErrorTop7" value="17.95661"/> <userParam name="StdevRelErrorTop7" value="0.0"/> </SpectrumIdentificationItem> <SpectrumIdentificationItem chargeState="3" experimentalMassToCharge="519.6590576171875" calculatedMassToCharge="519.994140625" peptide_ref="Pep_LLQRLLDDRK" rank="2" passThreshold="true" id="SII_61_2"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_14936_LLQRLLDDRK_5432"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_20505_LLQRLLDDRK_3390"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_41827_LLQRLLDDRK_3314"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-23"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="47"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="8.972333E-4"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="35.470325"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="725.0"/> </SpectrumIdentificationItem> </SpectrumIdentificationResult> <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1210 experiment=3" spectraData_ref="SID_1" id="SIR_44"> <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="461.7162170410156" calculatedMassToCharge="461.9718322753906" peptide_ref="Pep_NE128+16A128+16CGSNVRQK" rank="1" passThreshold="true" id="SII_44_1"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_67926_NE128+16A128+16CGSNVRQK_2447"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_75467_NE128+16A128+16CGSNVRQK_2377"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_96865_NE128+16A128+16CGSNVRQK_2377"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-17"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="57"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="1.6894571E-4"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="6.763066"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0044247787"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0044247787"/> <userParam name="MS2IonCurrent" value="452.0"/> <userParam name="NumMatchedMainIons" value="1"/> <userParam name="MeanErrorAll" value="16.15865"/> <userParam name="StdevErrorAll" value="0.0"/> <userParam name="MeanErrorTop7" value="16.15865"/> <userParam name="StdevErrorTop7" value="0.0"/> <userParam name="MeanRelErrorAll" value="16.15865"/> <userParam name="StdevRelErrorAll" value="0.0"/> <userParam name="MeanRelErrorTop7" value="16.15865"/> <userParam name="StdevRelErrorTop7" value="0.0"/> </SpectrumIdentificationItem> <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="461.7162170410156" calculatedMassToCharge="461.9718322753906" peptide_ref="Pep_QRVNSGC128+16A128+16ENK" rank="2" passThreshold="true" id="SII_44_2"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_14657_QRVNSGC128+16A128+16ENK_5153"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_20226_QRVNSGC128+16A128+16ENK_3111"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_41548_QRVNSGC128+16A128+16ENK_3035"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-30"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="57"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0018074971"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="72.35592"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="452.0"/> </SpectrumIdentificationItem> </SpectrumIdentificationResult> <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1191 experiment=2" spectraData_ref="SID_1" id="SIR_8"> <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="435.7113037109375" calculatedMassToCharge="435.96044921875" peptide_ref="Pep_130--17ESSSISEAE128+16QK" rank="1" passThreshold="true" id="SII_8_1"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_79379_130--17ESSSISEAE128+16QK_122"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-28"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="40"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="1.7160356E-4"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="6.869462"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.044554457"/> <userParam name="NTermIonCurrentRatio" value="0.03217822"/> <userParam name="CTermIonCurrentRatio" value="0.012376238"/> <userParam name="MS2IonCurrent" value="404.0"/> <userParam name="NumMatchedMainIons" value="2"/> <userParam name="MeanErrorAll" value="19.003765"/> <userParam name="StdevErrorAll" value="0.682242"/> <userParam name="MeanErrorTop7" value="19.003765"/> <userParam name="StdevErrorTop7" value="0.682242"/> <userParam name="MeanRelErrorAll" value="-19.003765"/> <userParam name="StdevRelErrorAll" value="0.682242"/> <userParam name="MeanRelErrorTop7" value="-19.003765"/> <userParam name="StdevRelErrorTop7" value="0.682242"/> </SpectrumIdentificationItem> <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="435.7113037109375" calculatedMassToCharge="435.96044921875" peptide_ref="Pep_130--17128+16EAESISSSEQK" rank="2" passThreshold="true" id="SII_8_2"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_23356_130--17128+16EAESISSSEQK_74"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-36"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="40"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="6.8353146E-4"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="27.362448"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="404.0"/> </SpectrumIdentificationItem> </SpectrumIdentificationResult> <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1209 experiment=2" spectraData_ref="SID_1" id="SIR_39"> <SpectrumIdentificationItem chargeState="6" experimentalMassToCharge="452.254638671875" calculatedMassToCharge="452.25213623046875" peptide_ref="Pep_LQKVAHDLMEIEGEPAPDRK" rank="1" passThreshold="true" id="SII_39_1"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_13608_LQKVAHDLMEIEGEPAPDRK_4104"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_19177_LQKVAHDLMEIEGEPAPDRK_2062"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_40499_LQKVAHDLMEIEGEPAPDRK_1986"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-24"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="64"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="1.8168578E-4"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="7.461472"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="0"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="1024.0"/> </SpectrumIdentificationItem> <SpectrumIdentificationItem chargeState="6" experimentalMassToCharge="452.254638671875" calculatedMassToCharge="452.25213623046875" peptide_ref="Pep_RDPAPEGEIEMLDHAVKQLK" rank="2" passThreshold="true" id="SII_39_2"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_68968_RDPAPEGEIEMLDHAVKQLK_3489"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_76509_RDPAPEGEIEMLDHAVKQLK_3419"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_97907_RDPAPEGEIEMLDHAVKQLK_3419"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-40"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="64"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0029742222"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="122.14536"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="0"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.001953125"/> <userParam name="NTermIonCurrentRatio" value="0.001953125"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="1024.0"/> <userParam name="NumMatchedMainIons" value="1"/> <userParam name="MeanErrorAll" value="4.5456934"/> <userParam name="StdevErrorAll" value="0.0"/> <userParam name="MeanErrorTop7" value="4.5456934"/> <userParam name="StdevErrorTop7" value="0.0"/> <userParam name="MeanRelErrorAll" value="4.5456934"/> <userParam name="StdevRelErrorAll" value="0.0"/> <userParam name="MeanRelErrorTop7" value="4.5456934"/> <userParam name="StdevRelErrorTop7" value="0.0"/> </SpectrumIdentificationItem> </SpectrumIdentificationResult> <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1213 experiment=5" spectraData_ref="SID_1" id="SIR_57"> <SpectrumIdentificationItem chargeState="3" experimentalMassToCharge="575.3018188476562" calculatedMassToCharge="575.3076171875" peptide_ref="Pep_ECCDKPLLEK" rank="1" passThreshold="true" id="SII_57_1"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_44236_ECCDKPLLEK_300"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-22"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="59"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="2.1942661E-4"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="8.674592"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="0"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0014619883"/> <userParam name="NTermIonCurrentRatio" value="0.0014619883"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="684.0"/> <userParam name="NumMatchedMainIons" value="1"/> <userParam name="MeanErrorAll" value="12.832601"/> <userParam name="StdevErrorAll" value="0.0"/> <userParam name="MeanErrorTop7" value="12.832601"/> <userParam name="StdevErrorTop7" value="0.0"/> <userParam name="MeanRelErrorAll" value="12.832601"/> <userParam name="StdevRelErrorAll" value="0.0"/> <userParam name="MeanRelErrorTop7" value="12.832601"/> <userParam name="StdevRelErrorTop7" value="0.0"/> </SpectrumIdentificationItem> <SpectrumIdentificationItem chargeState="3" experimentalMassToCharge="575.3018188476562" calculatedMassToCharge="575.3076171875" peptide_ref="Pep_ELLPKDCCEK" rank="2" passThreshold="true" id="SII_57_2"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_100211_ELLPKDCCEK_300"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-26"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="59"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="4.269645E-4"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="16.879189"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="0"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0058479533"/> <userParam name="NTermIonCurrentRatio" value="0.0058479533"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="684.0"/> <userParam name="NumMatchedMainIons" value="1"/> <userParam name="MeanErrorAll" value="6.54115"/> <userParam name="StdevErrorAll" value="0.0"/> <userParam name="MeanErrorTop7" value="6.54115"/> <userParam name="StdevErrorTop7" value="0.0"/> <userParam name="MeanRelErrorAll" value="-6.54115"/> <userParam name="StdevRelErrorAll" value="0.0"/> <userParam name="MeanRelErrorTop7" value="-6.54115"/> <userParam name="StdevRelErrorTop7" value="0.0"/> </SpectrumIdentificationItem> </SpectrumIdentificationResult> <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1218 experiment=2" spectraData_ref="SID_1" id="SIR_73"> <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="577.770751953125" calculatedMassToCharge="578.0166625976562" peptide_ref="Pep_VASLRETYGD128+16ADCCEK" rank="1" passThreshold="true" id="SII_73_1"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_44037_VASLRETYGD128+16ADCCEK_101"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-24"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="78"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="3.0161935E-4"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="12.255397"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="939.0"/> </SpectrumIdentificationItem> <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="577.770751953125" calculatedMassToCharge="578.0166625976562" peptide_ref="Pep_ECCDA128+16DGYTERLSAVK" rank="2" passThreshold="true" id="SII_73_2"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_100403_ECCDA128+16DGYTERLSAVK_492"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-40"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="78"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0042000134"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="170.65494"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="939.0"/> </SpectrumIdentificationItem> </SpectrumIdentificationResult> <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1213 experiment=3" spectraData_ref="SID_1" id="SIR_55"> <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="547.2749633789062" calculatedMassToCharge="547.2743530273438" peptide_ref="Pep_LPQGYHPNDVEEEWGK" rank="1" passThreshold="true" id="SII_55_1"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_9972_LPQGYHPNDVEEEWGK_468"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_17583_LPQGYHPNDVEEEWGK_468"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_38905_LPQGYHPNDVEEEWGK_392"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-24"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="71"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="3.7047637E-4"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="14.998364"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="0"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0031120332"/> <userParam name="NTermIonCurrentRatio" value="0.0031120332"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="964.0"/> <userParam name="NumMatchedMainIons" value="1"/> <userParam name="MeanErrorAll" value="19.94787"/> <userParam name="StdevErrorAll" value="0.0"/> <userParam name="MeanErrorTop7" value="19.94787"/> <userParam name="StdevErrorTop7" value="0.0"/> <userParam name="MeanRelErrorAll" value="-19.94787"/> <userParam name="StdevRelErrorAll" value="0.0"/> <userParam name="MeanRelErrorTop7" value="-19.94787"/> <userParam name="StdevRelErrorTop7" value="0.0"/> </SpectrumIdentificationItem> <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="547.2749633789062" calculatedMassToCharge="547.2743530273438" peptide_ref="Pep_GWEEEVDNPHYGQPLK" rank="2" passThreshold="true" id="SII_55_2"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_72608_GWEEEVDNPHYGQPLK_7129"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_78107_GWEEEVDNPHYGQPLK_5017"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_99505_GWEEEVDNPHYGQPLK_5017"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-38"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="71"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.003828229"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="154.98203"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="0"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0031120332"/> <userParam name="NTermIonCurrentRatio" value="0.0031120332"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="964.0"/> <userParam name="NumMatchedMainIons" value="1"/> <userParam name="MeanErrorAll" value="13.475464"/> <userParam name="StdevErrorAll" value="0.0"/> <userParam name="MeanErrorTop7" value="13.475464"/> <userParam name="StdevErrorTop7" value="0.0"/> <userParam name="MeanRelErrorAll" value="-13.475464"/> <userParam name="StdevRelErrorAll" value="0.0"/> <userParam name="MeanRelErrorTop7" value="-13.475464"/> <userParam name="StdevRelErrorTop7" value="0.0"/> </SpectrumIdentificationItem> </SpectrumIdentificationResult> <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1281 experiment=2" spectraData_ref="SID_1" id="SIR_103"> <SpectrumIdentificationItem chargeState="5" experimentalMassToCharge="591.745361328125" calculatedMassToCharge="591.944091796875" peptide_ref="Pep_ILWAQKKAMGSNMEKVCLK" rank="1" passThreshold="true" id="SII_103_1"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_104712_ILWAQKKAMGSNMEKVCLK_360"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_107586_ILWAQKKAMGSNMEKVCLK_360"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_108718_ILWAQKKAMGSNMEKVCLK_360"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_109818_ILWAQKKAMGSNMEKVCLK_360"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-35"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="107"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="6.732259E-4"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="27.551098"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="571.0"/> </SpectrumIdentificationItem> <SpectrumIdentificationItem chargeState="5" experimentalMassToCharge="591.745361328125" calculatedMassToCharge="591.944091796875" peptide_ref="Pep_LCVKEMNSGMAKKQAWLIK" rank="2" passThreshold="true" id="SII_103_2"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_49100_LCVKEMNSGMAKKQAWLIK_723"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_52006_LCVKEMNSGMAKKQAWLIK_755"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_53106_LCVKEMNSGMAKKQAWLIK_723"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_54206_LCVKEMNSGMAKKQAWLIK_723"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-40"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="107"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0014232383"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="58.244606"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="571.0"/> </SpectrumIdentificationItem> </SpectrumIdentificationResult> <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1231 experiment=2" spectraData_ref="SID_1" id="SIR_96"> <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="490.2488098144531" calculatedMassToCharge="490.2491760253906" peptide_ref="Pep_S128+16ENEDKEETVAK" rank="1" passThreshold="true" id="SII_96_1"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_10617_S128+16ENEDKEETVAK_1113"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_18226_S128+16ENEDKEETVAK_1111"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_39548_S128+16ENEDKEETVAK_1035"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-26"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="72"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="6.884119E-4"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="27.557816"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="0"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="611.0"/> </SpectrumIdentificationItem> <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="490.2488098144531" calculatedMassToCharge="490.2491760253906" peptide_ref="Pep_AVTEEKDENE128+16SK" rank="2" passThreshold="true" id="SII_96_2"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_71966_AVTEEKDENE128+16SK_6487"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_77467_AVTEEKDENE128+16SK_4377"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_98865_AVTEEKDENE128+16SK_4377"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-32"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="72"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0018720039"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="74.93819"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="0"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0016366612"/> <userParam name="NTermIonCurrentRatio" value="0.0016366612"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="611.0"/> <userParam name="NumMatchedMainIons" value="1"/> <userParam name="MeanErrorAll" value="18.694866"/> <userParam name="StdevErrorAll" value="0.0"/> <userParam name="MeanErrorTop7" value="18.694866"/> <userParam name="StdevErrorTop7" value="0.0"/> <userParam name="MeanRelErrorAll" value="-18.694866"/> <userParam name="StdevRelErrorAll" value="0.0"/> <userParam name="MeanRelErrorTop7" value="-18.694866"/> <userParam name="StdevRelErrorTop7" value="0.0"/> </SpectrumIdentificationItem> </SpectrumIdentificationResult> <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1213 experiment=2" spectraData_ref="SID_1" id="SIR_54"> <SpectrumIdentificationItem chargeState="5" experimentalMassToCharge="497.6971435546875" calculatedMassToCharge="497.8994140625" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" rank="1" passThreshold="true" id="SII_54_1"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_89308_VFIQMGGRLRLVLHLTSEK_73"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_89384_VFIQMGGRLRLVLHLTSEK_149"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_89460_VFIQMGGRLRLVLHLTSEK_225"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_89614_VFIQMGGRLRLVLHLTSEK_73"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_89690_VFIQMGGRLRLVLHLTSEK_149"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_89766_VFIQMGGRLRLVLHLTSEK_225"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_100592_VFIQMGGRLRLVLHLTSEK_73"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_100668_VFIQMGGRLRLVLHLTSEK_149"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_100744_VFIQMGGRLRLVLHLTSEK_225"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_101701_VFIQMGGRLRLVLHLTSEK_78"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_101777_VFIQMGGRLRLVLHLTSEK_154"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_101853_VFIQMGGRLRLVLHLTSEK_230"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_101929_VFIQMGGRLRLVLHLTSEK_306"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_102005_VFIQMGGRLRLVLHLTSEK_382"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_102081_VFIQMGGRLRLVLHLTSEK_458"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_102157_VFIQMGGRLRLVLHLTSEK_534"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_102233_VFIQMGGRLRLVLHLTSEK_610"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-35"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="80"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0011284485"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="46.180626"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="1027.0"/> </SpectrumIdentificationItem> <SpectrumIdentificationItem chargeState="5" experimentalMassToCharge="497.6971435546875" calculatedMassToCharge="497.8994140625" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" rank="2" passThreshold="true" id="SII_54_2"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_33324_ESTLHLVLRLRGGMQIFVK_64"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_33400_ESTLHLVLRLRGGMQIFVK_140"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_33476_ESTLHLVLRLRGGMQIFVK_216"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_33630_ESTLHLVLRLRGGMQIFVK_64"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_33706_ESTLHLVLRLRGGMQIFVK_140"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_33782_ESTLHLVLRLRGGMQIFVK_216"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_44608_ESTLHLVLRLRGGMQIFVK_64"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_44684_ESTLHLVLRLRGGMQIFVK_140"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_44760_ESTLHLVLRLRGGMQIFVK_216"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_45712_ESTLHLVLRLRGGMQIFVK_64"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_45788_ESTLHLVLRLRGGMQIFVK_140"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_45864_ESTLHLVLRLRGGMQIFVK_216"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_45940_ESTLHLVLRLRGGMQIFVK_292"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_46016_ESTLHLVLRLRGGMQIFVK_368"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_46092_ESTLHLVLRLRGGMQIFVK_444"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_46168_ESTLHLVLRLRGGMQIFVK_520"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_46244_ESTLHLVLRLRGGMQIFVK_596"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-39"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="80"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0021231007"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="86.88577"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="9.7370986E-4"/> <userParam name="NTermIonCurrentRatio" value="9.7370986E-4"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="1027.0"/> <userParam name="NumMatchedMainIons" value="1"/> <userParam name="MeanErrorAll" value="1.8923733"/> <userParam name="StdevErrorAll" value="0.0"/> <userParam name="MeanErrorTop7" value="1.8923733"/> <userParam name="StdevErrorTop7" value="0.0"/> <userParam name="MeanRelErrorAll" value="-1.8923733"/> <userParam name="StdevRelErrorAll" value="0.0"/> <userParam name="MeanRelErrorTop7" value="-1.8923733"/> <userParam name="StdevRelErrorTop7" value="0.0"/> </SpectrumIdentificationItem> </SpectrumIdentificationResult> <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1283 experiment=2" spectraData_ref="SID_1" id="SIR_104"> <SpectrumIdentificationItem chargeState="3" experimentalMassToCharge="591.3255615234375" calculatedMassToCharge="591.3304443359375" peptide_ref="Pep_MAFRDVAVAFTQK" rank="1" passThreshold="true" id="SII_104_1"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_3312_MAFRDVAVAFTQK_1"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_27068_MAFRDVAVAFTQK_1"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-26"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="85"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0011559059"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="46.27207"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="0"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="1072.0"/> </SpectrumIdentificationItem> </SpectrumIdentificationResult> <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1428 experiment=2" spectraData_ref="SID_1" id="SIR_105"> <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="585.301513671875" calculatedMassToCharge="585.5540161132812" peptide_ref="Pep_130--17TVEAYSAAVQSQLQWMK" rank="1" passThreshold="true" id="SII_105_1"> <PeptideEvidenceRef peptideEvidence_ref="PepEv_10335_130--17TVEAYSAAVQSQLQWMK_831"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_17946_130--17TVEAYSAAVQSQLQWMK_831"/> <PeptideEvidenceRef peptideEvidence_ref="PepEv_39268_130--17TVEAYSAAVQSQLQWMK_755"/> <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-47"/> <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="93"/> <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.002895186"/> <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="118.0599"/> <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/> <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/> <userParam name="IsotopeError" value="-1"/> <userParam name="AssumedDissociationMethod" value="HCD"/> <userParam name="ExplainedIonCurrentRatio" value="0.0"/> <userParam name="NTermIonCurrentRatio" value="0.0"/> <userParam name="CTermIonCurrentRatio" value="0.0"/> <userParam name="MS2IonCurrent" value="330.0"/> </SpectrumIdentificationItem> </SpectrumIdentificationResult> </SpectrumIdentificationList> </AnalysisData> </DataCollection> </MzIdentML>