# HG changeset patch
# User galaxyp
# Date 1512395855 18000
# Node ID a26f5807eb85d77128f45ffbff78cc06d0c674b7
# Parent  09e0ae6f661bda4fdd2ab3c10d5c6c8122d617e9
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit 75603eb19ef066d891fd906d7dd4b06f5498ca68

diff -r 09e0ae6f661b -r a26f5807eb85 msgfplus.xml
--- a/msgfplus.xml	Mon Oct 30 18:03:25 2017 -0400
+++ b/msgfplus.xml	Mon Dec 04 08:57:35 2017 -0500
@@ -1,4 +1,4 @@
-<tool id="msgfplus" name="MS-GF+" version="0.4">
+<tool id="msgfplus" name="MS-GF+" version="0.5">
     <description>
         Identifies peptides in tandem mass spectra using the MS-GF+ search engine.
     </description>
@@ -56,12 +56,15 @@
             -maxCharge $advanced.maxCharge
             -n $advanced.n
             -addFeatures $advanced.addFeatures
-        #if $tsvcheck
-            &&
-            msgf_plus
-              edu.ucsd.msjava.ui.MzIDToTsv
-              -i '$output_name'
-              -o output.tsv
+        #if $tsv == 'targets' or $tsv == 'decoys' 
+	    &&
+	    msgf_plus
+	        edu.ucsd.msjava.ui.MzIDToTsv
+	        -i '$output_name'
+	        -o output.tsv
+            #if $tsv == 'decoys'
+                -showDecoy 1
+            #end if
         #end if
         &&
         mv '$output_name' output
@@ -82,7 +85,10 @@
                       label="Collection: Pairs of spectra (forward) and FASTA database (reverse)"/>
               </when>
         </conditional>
-        <param name="tsvcheck" type="boolean" label="Output TSV as well?" />
+        <param name="tsv" type="select" label="Output TSV as well?">
+            <option value="targets">Only target PSMs</option>
+            <option value="decoys">Both target and decoy PSMs</option>
+        </param>
         <param argument="-tda" type="boolean" truevalue="1" falsevalue="0" checked="true" label="Search with on-the-fly decoy database?" help="MSGF+ uses XXX_ as an accession prefix to indicate a decoy hit" />
         <param argument="-t" type="float" value="10" label="Precursor mass tolerance" help="Error tolerance for matching peptide mass to precursor ion mass"/>
         <param name="precursor_ion_tol_units" type="select" label="Precursor mass tolerance units" help="Daltons are common for low-res instruments, ppm for high-res instruments">
@@ -246,7 +252,7 @@
             <param name="msgf_input|intype_selector" value="single" />
             <param name="msgf_input|s" value="input/201208-378803.mzML" />
             <param name="msgf_input|d" value="input/cow.protein.PRG2012-subset.fasta" />
-            <param name="tsvcheck" value="true" />
+            <param name="tsv" value="decoys" />
             <param name="tda" value="1" />
             <param name="ntt" value="1" />
             <param name="t" value="50" />
diff -r 09e0ae6f661b -r a26f5807eb85 test-data/201208-378803-msgf_20161026-50ppm-semitryptic-no_mods.tsv
--- a/test-data/201208-378803-msgf_20161026-50ppm-semitryptic-no_mods.tsv	Mon Oct 30 18:03:25 2017 -0400
+++ b/test-data/201208-378803-msgf_20161026-50ppm-semitryptic-no_mods.tsv	Mon Dec 04 08:57:35 2017 -0500
@@ -1,58 +1,115 @@
 #SpecFile	SpecID	ScanNum	FragMethod	Precursor	IsotopeError	PrecursorError(ppm)	Charge	Peptide	Protein	DeNovoScore	MSGFScore	SpecEValue	EValue	QValue	PepQValue
+201208-378803.mzML	sample=1 period=1 cycle=1224 experiment=2	-1	HCD	576.29333	0	4.977789	3	ISELFDKLDSMSVDK	XXX_gi|528968104|ref|XP_005212567.1|(pre=R,post=I);XXX_gi|528968106|ref|XP_005212568.1|(pre=R,post=I);XXX_gi|528968108|ref|XP_005212569.1|(pre=R,post=I);XXX_gi|115497338|ref|NP_001069884.1|(pre=R,post=I)	57	4	9.778316E-8	0.003944279	0.5	0.5
 201208-378803.mzML	sample=1 period=1 cycle=1209 experiment=2	-1	HCD	452.25464	1	-28.719826	3	PKNDPKLKTQGK	gi|528993971|ref|XP_005219929.1|(pre=F,post=C);gi|528993973|ref|XP_005219930.1|(pre=F,post=C);gi|528993975|ref|XP_005219931.1|(pre=F,post=C);gi|27806851|ref|NP_776358.1|(pre=F,post=C)	54	7	8.911494E-7	0.0355328	0.5	0.5
 201208-378803.mzML	sample=1 period=1 cycle=1215 experiment=4	-1	HCD	674.35315	1	-2.036408	2	EPISVSSQQMLK	gi|30466252|ref|NP_848667.1|(pre=K,post=F)	62	-1	1.9064777E-6	0.076016985	0.5	0.5
+201208-378803.mzML	sample=1 period=1 cycle=1211 experiment=5	-1	HCD	498.23474	1	-48.682938	3	VWGFKVAGAQDEGK	XXX_gi|358414198|ref|XP_002700672.2|(pre=K,post=N);XXX_gi|528966552|ref|XP_005211956.1|(pre=K,post=N);XXX_gi|528966554|ref|XP_005211957.1|(pre=K,post=N);XXX_gi|297479727|ref|XP_002690982.1|(pre=K,post=N)	49	0	2.5485353E-6	0.10241799	0.5	0.5
 201208-378803.mzML	sample=1 period=1 cycle=1219 experiment=4	-1	HCD	482.2116	0	-38.413548	2	PTAEFQDR	gi|32880221|ref|NP_872593.1|(pre=V,post=I)	45	-4	2.6478965E-6	0.10364397	0.5	0.5
 201208-378803.mzML	sample=1 period=1 cycle=1207 experiment=3	-1	HCD	467.23608	0	0.71846676	3	TVMENFVAFVDK	gi|30794280|ref|NP_851335.1|(pre=K,post=C)	57	-6	3.189995E-6	0.12719467	0.5	0.5
+201208-378803.mzML	sample=1 period=1 cycle=1239 experiment=2	-1	HCD	486.20413	1	-40.78166	3	ESRCSRESRCSR	XXX_gi|528944676|ref|XP_005204734.1|(pre=R,post=E);XXX_gi|528944678|ref|XP_005204735.1|(pre=R,post=E);XXX_gi|219804516|ref|NP_001137332.1|(pre=R,post=E)	56	-11	5.136259E-6	0.20479806	0.75	0.75
+201208-378803.mzML	sample=1 period=1 cycle=1212 experiment=3	-1	HCD	577.2474	1	-39.847073	3	ACCEELTAEYEKALR	XXX_gi|30794280|ref|NP_851335.1|(pre=K,post=L)	101	3	5.329578E-6	0.21497919	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1210 experiment=4	-1	HCD	547.77606	1	23.25557	2	EVEDEGFLR	XXX_gi|528944676|ref|XP_005204734.1|(pre=V,post=A);XXX_gi|528944678|ref|XP_005204735.1|(pre=V,post=A);XXX_gi|219804516|ref|NP_001137332.1|(pre=V,post=A)	41	-7	7.260432E-6	0.28565443	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1235 experiment=2	-1	HCD	667.8608	1	26.479294	2	MHQIYVQCAKL	XXX_gi|528921178|ref|XP_592304.7|(pre=R,post=S);XXX_gi|528921180|ref|XP_005195747.1|(pre=R,post=S);XXX_gi|528995523|ref|XP_002695913.2|(pre=R,post=S)	67	-11	7.413187E-6	0.29435542	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1212 experiment=4	-1	HCD	598.30597	0	-30.093014	3	KKYMRWMNHKKSR	gi|528944676|ref|XP_005204734.1|(pre=R,post=V);gi|528944678|ref|XP_005204735.1|(pre=R,post=V);gi|219804516|ref|NP_001137332.1|(pre=R,post=V)	65	-8	8.5034735E-6	0.34040257	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1217 experiment=2	-1	HCD	501.74426	0	-40.019917	2	LAEAEKEGR	gi|528944676|ref|XP_005204734.1|(pre=T,post=L)	81	15	8.546935E-6	0.3362706	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1223 experiment=2	-1	HCD	610.7609	0	-38.472713	2	AEMFEHLSEK	gi|528944676|ref|XP_005204734.1|(pre=Q,post=L);gi|528944678|ref|XP_005204735.1|(pre=Q,post=L);gi|219804516|ref|NP_001137332.1|(pre=Q,post=L)	96	3	8.9886025E-6	0.35534644	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1428 experiment=2	-1	HCD	585.3015	1	46.39611	2	SFNQEPQYR	XXX_gi|139948503|ref|NP_001077142.1|(pre=K,post=L)	77	-15	9.87155E-6	0.38838625	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1283 experiment=2	-1	HCD	591.32556	0	48.411358	3	SKVNNYFWELSQTR	XXX_gi|358418103|ref|XP_600387.4|(pre=R,post=L);XXX_gi|528923273|ref|XP_005196452.1|(pre=R,post=L);XXX_gi|297488451|ref|XP_002696970.1|(pre=R,post=L);XXX_gi|529000951|ref|XP_005222651.1|(pre=R,post=L)	87	-5	9.987389E-6	0.4013632	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1210 experiment=2	-1	HCD	597.28906	1	-5.9811645	2	PNTEPTHHFI	gi|528928354|ref|XP_005193233.1|(pre=R,post=H)	93	0	1.0661531E-5	0.42148226	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1216 experiment=5	-1	HCD	575.80475	0	-1.3779948	2	EGVAICKAGFR	XXX_gi|32880221|ref|NP_872593.1|(pre=S,post=H)	72	8	1.1603542E-5	0.46074182	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1217 experiment=4	-1	HCD	571.8232	1	-41.180023	2	QLEDILVLAK	gi|528944676|ref|XP_005204734.1|(pre=K,post=Q);gi|528944678|ref|XP_005204735.1|(pre=K,post=Q);gi|219804516|ref|NP_001137332.1|(pre=K,post=Q)	59	-1	1.18926155E-5	0.47015077	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1223 experiment=3	-1	HCD	478.24365	0	-42.496838	2	AAQGALQPSL	gi|528921178|ref|XP_592304.7|(pre=K,post=Y);gi|528921180|ref|XP_005195747.1|(pre=K,post=Y);gi|528995523|ref|XP_002695913.2|(pre=K,post=Y)	56	-16	1.2600591E-5	0.49813917	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1214 experiment=5	-1	HCD	519.65906	0	35.002014	3	VNPVTALTLLEKMK	gi|528968106|ref|XP_005212568.1|(pre=R,post=D)	56	-5	1.9413415E-5	0.780167	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1204 experiment=3	-1	HCD	722.7726	1	45.906574	3	FEIWVELLKYLEEIRGK	XXX_gi|528944676|ref|XP_005204734.1|(pre=G,post=E);XXX_gi|528944678|ref|XP_005204735.1|(pre=G,post=E);XXX_gi|219804516|ref|NP_001137332.1|(pre=G,post=E)	82	-16	2.0022577E-5	0.8135574	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1231 experiment=2	-1	HCD	490.2488	1	4.9017324	3	TIFDTEIESTSPK	gi|528968104|ref|XP_005212567.1|(pre=Y,post=S);gi|528968106|ref|XP_005212568.1|(pre=Y,post=S);gi|528968108|ref|XP_005212569.1|(pre=Y,post=S);gi|115497338|ref|NP_001069884.1|(pre=Y,post=S)	65	-18	2.1515163E-5	0.8612735	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1236 experiment=2	-1	HCD	482.22714	1	-29.771694	2	DTNIQICR	XXX_gi|528921178|ref|XP_592304.7|(pre=S,post=T);XXX_gi|528921180|ref|XP_005195747.1|(pre=S,post=T);XXX_gi|528995523|ref|XP_002695913.2|(pre=S,post=T)	67	-6	2.2036973E-5	0.86257124	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1220 experiment=2	-1	HCD	410.21426	1	-45.215214	3	QLEGRLQDLR	gi|528944676|ref|XP_005204734.1|(pre=E,post=A)	51	-8	2.3277607E-5	0.9202336	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1203 experiment=3	-1	HCD	520.2384	1	-11.917462	2	RAFQECER	XXX_gi|528968104|ref|XP_005212567.1|(pre=S,post=V);XXX_gi|528968106|ref|XP_005212568.1|(pre=S,post=V);XXX_gi|528968108|ref|XP_005212569.1|(pre=S,post=V)	55	-1	2.5448287E-5	0.99609685	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1181 experiment=2	-1	HCD	506.74472	1	-13.802416	2	LECTNLYR	gi|528944676|ref|XP_005204734.1|(pre=R,post=K);gi|528944678|ref|XP_005204735.1|(pre=R,post=K);gi|219804516|ref|NP_001137332.1|(pre=R,post=K)	35	-17	2.9523253E-5	1.1555992	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1202 experiment=2	-1	HCD	489.23615	0	-25.636705	3	LMLLSRDDSGSGSK	gi|528944676|ref|XP_005204734.1|(pre=R,post=T);gi|528944678|ref|XP_005204735.1|(pre=R,post=T);gi|219804516|ref|NP_001137332.1|(pre=R,post=T)	75	-17	3.1620126E-5	1.270718	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1207 experiment=2	-1	HCD	540.2458	0	33.216236	3	ATEGTQLFNDYCEQ	XXX_gi|358414198|ref|XP_002700672.2|(pre=K,post=N);XXX_gi|528966552|ref|XP_005211956.1|(pre=K,post=N);XXX_gi|528966554|ref|XP_005211957.1|(pre=K,post=N);XXX_gi|297479727|ref|XP_002690982.1|(pre=K,post=N)	77	-15	3.191305E-5	1.2824897	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1222 experiment=2	-1	HCD	582.2852	0	-48.73894	3	IQNGALNCEEKLTLAK	gi|528944676|ref|XP_005204734.1|(pre=K,post=N);gi|528944678|ref|XP_005204735.1|(pre=K,post=N);gi|219804516|ref|NP_001137332.1|(pre=K,post=N)	94	-17	3.4877667E-5	1.4119875	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1229 experiment=3	-1	HCD	710.8027	0	12.279265	2	CVCDECGRGFGFK	gi|528908802|ref|XP_005199340.1|(pre=P,post=S);gi|528908804|ref|XP_005199341.1|(pre=P,post=S);gi|528908806|ref|XP_005199342.1|(pre=P,post=S);gi|528908808|ref|XP_005199343.1|(pre=P,post=S);gi|528908810|ref|XP_005199344.1|(pre=P,post=S);gi|528908812|ref|XP_609847.5|(pre=P,post=S);gi|528959647|ref|XP_005210511.1|(pre=P,post=S);gi|528959649|ref|XP_005210512.1|(pre=P,post=S);gi|528959651|ref|XP_005210513.1|(pre=P,post=S);gi|528959653|ref|XP_005210514.1|(pre=P,post=S);gi|528959655|ref|XP_005210515.1|(pre=P,post=S);gi|528959657|ref|XP_002689899.2|(pre=P,post=S)	53	-24	3.7364465E-5	1.495737	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1213 experiment=3	-1	HCD	547.27496	0	6.6915793	2	RMMESRQR	XXX_gi|528928354|ref|XP_005193233.1|(pre=K,post=S)	42	-14	3.915081E-5	1.532441	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1219 experiment=2	-1	HCD	487.24332	0	-15.908564	3	RSDVEQLDQEIK	gi|528944676|ref|XP_005204734.1|(pre=I,post=E);gi|528944678|ref|XP_005204735.1|(pre=I,post=E);gi|219804516|ref|NP_001137332.1|(pre=I,post=E)	80	-10	4.2131483E-5	1.6799086	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1228 experiment=3	-1	HCD	606.27484	1	-8.0082855	2	WQEYQSRVD	gi|528944676|ref|XP_005204734.1|(pre=R,post=S);gi|528944678|ref|XP_005204735.1|(pre=R,post=S);gi|219804516|ref|NP_001137332.1|(pre=R,post=S)	36	-21	4.2569478E-5	1.6748536	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1209 experiment=3	-1	HCD	570.7028	1	20.262213	3	RKFIIHRGKRKAAQ	gi|528921178|ref|XP_592304.7|(pre=K,post=G);gi|528921180|ref|XP_005195747.1|(pre=K,post=G);gi|528995523|ref|XP_002695913.2|(pre=K,post=G)	89	-13	4.495753E-5	1.8067082	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1192 experiment=2	-1	HCD	443.23868	1	-21.24316	3	VKDIVNLTDVNP	XXX_gi|528944676|ref|XP_005204734.1|(pre=K,post=N)	56	-11	4.838571E-5	1.9292834	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1218 experiment=4	-1	HCD	647.81635	1	-44.54831	2	KELVDQRYDK	XXX_gi|528944676|ref|XP_005204734.1|(pre=Q,post=V);XXX_gi|528944678|ref|XP_005204735.1|(pre=Q,post=V);XXX_gi|219804516|ref|NP_001137332.1|(pre=Q,post=V)	49	-21	4.8764297E-5	1.9277989	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1218 experiment=4	-1	HCD	647.81635	1	16.644047	2	QNIDRCYPER	XXX_gi|528961840|ref|XP_005211303.1|(pre=L,post=Q);XXX_gi|528961845|ref|XP_005211304.1|(pre=L,post=Q);XXX_gi|156523214|ref|NP_001096021.1|(pre=L,post=Q)	49	-21	4.8764297E-5	1.9277989	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1216 experiment=2	-1	HCD	464.21527	1	-44.885506	3	QLAQQTEQKGCR	gi|528944676|ref|XP_005204734.1|(pre=S,post=A)	61	-17	4.9378592E-5	1.9688725	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1193 experiment=2	-1	HCD	458.70346	0	-45.10536	2	IFELEEH	XXX_gi|528944676|ref|XP_005204734.1|(pre=R,post=L);XXX_gi|528944678|ref|XP_005204735.1|(pre=R,post=L);XXX_gi|219804516|ref|NP_001137332.1|(pre=R,post=L)	103	15	5.257032E-5	2.046142	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1212 experiment=2	-1	HCD	653.3102	1	29.944271	3	VFEEMIEPYCLHESCK	gi|358414198|ref|XP_002700672.2|(pre=K,post=D);gi|528966552|ref|XP_005211956.1|(pre=K,post=D);gi|528966554|ref|XP_005211957.1|(pre=K,post=D);gi|297479727|ref|XP_002690982.1|(pre=K,post=D)	87	-14	5.4227086E-5	2.1953294	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1213 experiment=5	-1	HCD	575.3018	0	-17.398853	2	GLRFDWSLR	XXX_gi|528961840|ref|XP_005211303.1|(pre=P,post=E);XXX_gi|528961845|ref|XP_005211304.1|(pre=P,post=E);XXX_gi|156523214|ref|NP_001096021.1|(pre=P,post=E)	45	-21	5.5088716E-5	2.1674106	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1229 experiment=4	-1	HCD	832.85156	0	31.366774	3	VLETLGINKRKIVNQLSNSLTR	XXX_gi|528968104|ref|XP_005212567.1|(pre=Q,post=T);XXX_gi|528968106|ref|XP_005212568.1|(pre=Q,post=T);XXX_gi|528968108|ref|XP_005212569.1|(pre=Q,post=T);XXX_gi|115497338|ref|NP_001069884.1|(pre=Q,post=T)	107	-25	5.553615E-5	2.2965865	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1234 experiment=2	-1	HCD	516.24426	0	27.548166	2	DPDNSIELE	XXX_gi|528944676|ref|XP_005204734.1|(pre=K,post=S);XXX_gi|528944678|ref|XP_005204735.1|(pre=K,post=S);XXX_gi|219804516|ref|NP_001137332.1|(pre=K,post=S)	67	-5	5.5706063E-5	2.1916993	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1580 experiment=2	-1	HCD	533.26227	1	-43.25022	3	LIIQLEQGDEPWR	gi|528908802|ref|XP_005199340.1|(pre=K,post=E);gi|528908804|ref|XP_005199341.1|(pre=K,post=E);gi|528908806|ref|XP_005199342.1|(pre=K,post=E);gi|528908808|ref|XP_005199343.1|(pre=K,post=E);gi|528908810|ref|XP_005199344.1|(pre=K,post=E);gi|528908812|ref|XP_609847.5|(pre=K,post=E);gi|528959647|ref|XP_005210511.1|(pre=K,post=E);gi|528959649|ref|XP_005210512.1|(pre=K,post=E);gi|528959651|ref|XP_005210513.1|(pre=K,post=E);gi|528959653|ref|XP_005210514.1|(pre=K,post=E);gi|528959655|ref|XP_005210515.1|(pre=K,post=E);gi|528959657|ref|XP_002689899.2|(pre=K,post=E)	38	-31	5.964108E-5	2.387492	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1212 experiment=5	-1	HCD	584.6379	1	36.493187	3	DPAPEGEIEMLDHAVK	XXX_gi|528944676|ref|XP_005204734.1|(pre=R,post=Q);XXX_gi|528944678|ref|XP_005204735.1|(pre=R,post=Q);XXX_gi|219804516|ref|NP_001137332.1|(pre=R,post=Q)	53	-14	6.189589E-5	2.505793	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1191 experiment=3	-1	HCD	400.68393	0	-14.166251	2	EVMEHR	gi|528944676|ref|XP_005204734.1|(pre=K,post=L);gi|528944678|ref|XP_005204735.1|(pre=K,post=L);gi|219804516|ref|NP_001137332.1|(pre=K,post=L)	27	-14	6.842939E-5	2.6465752	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1191 experiment=2	-1	HCD	435.7113	1	-7.500534	2	YNKCVDK	XXX_gi|30794280|ref|NP_851335.1|(pre=Q,post=D)	59	-9	7.040255E-5	2.7402081	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1187 experiment=2	-1	HCD	441.69095	1	-37.76365	2	GFGRGCER	XXX_gi|528908802|ref|XP_005199340.1|(pre=R,post=C);XXX_gi|528908804|ref|XP_005199341.1|(pre=R,post=C);XXX_gi|528908806|ref|XP_005199342.1|(pre=R,post=C);XXX_gi|528908808|ref|XP_005199343.1|(pre=R,post=C);XXX_gi|528908810|ref|XP_005199344.1|(pre=R,post=C);XXX_gi|528908812|ref|XP_609847.5|(pre=R,post=C);XXX_gi|528959647|ref|XP_005210511.1|(pre=R,post=C);XXX_gi|528959649|ref|XP_005210512.1|(pre=R,post=C);XXX_gi|528959651|ref|XP_005210513.1|(pre=R,post=C);XXX_gi|528959653|ref|XP_005210514.1|(pre=R,post=C);XXX_gi|528959655|ref|XP_005210515.1|(pre=R,post=C);XXX_gi|528959657|ref|XP_002689899.2|(pre=R,post=C)	76	-17	7.454565E-5	2.9178658	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1209 experiment=5	-1	HCD	404.1922	0	-21.819786	3	QLAQKYNCDK	gi|528954392|ref|XP_005208526.1|(pre=R,post=M);gi|115496708|ref|NP_001069831.1|(pre=R,post=M)	51	-14	7.684107E-5	3.037758	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1202 experiment=3	-1	HCD	423.6786	0	-15.198104	2	DLGEEHF	gi|30794280|ref|NP_851335.1|(pre=K,post=K)	36	-12	7.7868164E-5	3.0307846	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1215 experiment=3	-1	HCD	613.78107	1	-47.61758	2	DLPFLSNEYK	gi|528944676|ref|XP_005204734.1|(pre=K,post=E)	53	-26	8.023354E-5	3.1718724	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1627 experiment=2	-1	HCD	582.2651	0	-46.225098	3	DAHQKELVDQRYDK	XXX_gi|528944676|ref|XP_005204734.1|(pre=H,post=V);XXX_gi|528944678|ref|XP_005204735.1|(pre=H,post=V);XXX_gi|219804516|ref|NP_001137332.1|(pre=H,post=V)	44	-44	8.592158E-5	3.4529305	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1198 experiment=3	-1	HCD	613.27563	1	-36.601665	2	QLQEELAEHQ	gi|528944676|ref|XP_005204734.1|(pre=K,post=V);gi|528944678|ref|XP_005204735.1|(pre=K,post=V);gi|219804516|ref|NP_001137332.1|(pre=K,post=V)	47	-29	8.59888E-5	3.3993952	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1219 experiment=3	-1	HCD	509.25696	0	-0.53933096	2	DAENTVRGR	gi|528944676|ref|XP_005204734.1|(pre=R,post=L)	42	-23	8.931347E-5	3.5139492	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1583 experiment=2	-1	HCD	487.24054	0	-38.83126	3	LNKDEVVTVDEAK	XXX_gi|528944676|ref|XP_005204734.1|(pre=L,post=E)	45	-27	9.3443494E-5	3.7406363	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1192 experiment=3	-1	HCD	433.18747	0	-46.987206	2	LSETEMR	gi|528928354|ref|XP_005193233.1|(pre=Q,post=P)	34	-20	9.6144715E-5	3.7421446	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1217 experiment=3	-1	HCD	533.2589	1	47.60586	2	DELVCEDNK	XXX_gi|528944676|ref|XP_005204734.1|(pre=N,post=C);XXX_gi|528944678|ref|XP_005204735.1|(pre=N,post=C);XXX_gi|219804516|ref|NP_001137332.1|(pre=N,post=C)	100	-19	9.8740595E-5	3.88485	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1204 experiment=2	-1	HCD	623.2515	0	-37.505867	2	CIMKDCNYKQ	XXX_gi|528954392|ref|XP_005208526.1|(pre=R,post=A);XXX_gi|115496708|ref|NP_001069831.1|(pre=R,post=A)	100	-16	1.0204326E-4	4.034076	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1230 experiment=2	-1	HCD	814.3682	0	-4.27201	3	ALDARDDACELLDGHCCEKHVK	XXX_gi|30794280|ref|NP_851335.1|(pre=K,post=T)	136	-29	1.03722596E-4	4.289241	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1211 experiment=3	-1	HCD	507.2288	0	-22.681808	3	FGYEEQSLGFSQK	XXX_gi|28849955|ref|NP_788795.1|(pre=D,post=L);XXX_gi|119924469|ref|XP_001252524.1|(pre=D,post=L)	65	-23	1.0949449E-4	4.383174	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1229 experiment=5	-1	HCD	633.7723	0	-33.031372	2	AQQCVCCVWVK	XXX_gi|358418103|ref|XP_600387.4|(pre=R,post=E);XXX_gi|528923273|ref|XP_005196452.1|(pre=R,post=E);XXX_gi|297488451|ref|XP_002696970.1|(pre=R,post=E);XXX_gi|529000951|ref|XP_005222651.1|(pre=R,post=E)	79	-27	1.1053563E-4	4.389038	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1211 experiment=2	-1	HCD	442.18198	0	11.180697	2	FFNPDDE	XXX_gi|32880221|ref|NP_872593.1|(pre=K,post=R)	63	-13	1.1065043E-4	4.306736	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1209 experiment=4	-1	HCD	481.199	0	-36.782173	2	HAAEEEIY	gi|528968104|ref|XP_005212567.1|(pre=R,post=T);gi|528968106|ref|XP_005212568.1|(pre=R,post=T);gi|528968108|ref|XP_005212569.1|(pre=R,post=T)	46	-31	1.1874728E-4	4.648006	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1215 experiment=2	-1	HCD	605.81055	1	-36.649742	2	MPPLIPAEVDK	gi|528944676|ref|XP_005204734.1|(pre=R,post=I);gi|528944678|ref|XP_005204735.1|(pre=R,post=I);gi|219804516|ref|NP_001137332.1|(pre=R,post=I)	45	-26	1.2084616E-4	4.7984385	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1215 experiment=2	-1	HCD	605.81055	0	20.855597	2	QLAQKYNCDK	gi|528954392|ref|XP_005208526.1|(pre=R,post=M);gi|115496708|ref|NP_001069831.1|(pre=R,post=M)	45	-26	1.2084616E-4	4.7774115	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1215 experiment=2	-1	HCD	605.81055	1	47.04258	2	ESRELWNEF	XXX_gi|528944676|ref|XP_005204734.1|(pre=K,post=E);XXX_gi|528944678|ref|XP_005204735.1|(pre=K,post=E);XXX_gi|219804516|ref|NP_001137332.1|(pre=K,post=E)	45	-26	1.2084616E-4	4.7545714	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1196 experiment=2	-1	HCD	409.18747	1	-15.97708	2	YYKVDE	gi|528968221|ref|XP_005212615.1|(pre=K,post=N);gi|27807503|ref|NP_777203.1|(pre=K,post=N)	43	-16	1.217629E-4	4.709302	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1214 experiment=2	-1	HCD	510.20837	0	28.05353	2	MMSASSYNE	gi|528928354|ref|XP_005193233.1|(pre=R,post=D)	67	-20	1.2431844E-4	4.891185	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1188 experiment=3	-1	HCD	428.70352	1	-20.665169	2	LMHDPSR	XXX_gi|528944676|ref|XP_005204734.1|(pre=K,post=P);XXX_gi|528944678|ref|XP_005204735.1|(pre=K,post=P);XXX_gi|219804516|ref|NP_001137332.1|(pre=K,post=P)	93	-16	1.4716851E-4	5.7280927	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1221 experiment=2	-1	HCD	412.6839	1	-31.537086	2	YDGLVEQ	XXX_gi|528944676|ref|XP_005204734.1|(pre=R,post=I);XXX_gi|528944678|ref|XP_005204735.1|(pre=R,post=I);XXX_gi|219804516|ref|NP_001137332.1|(pre=R,post=I)	47	-24	1.4825392E-4	5.770339	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1221 experiment=2	-1	HCD	412.6839	1	-37.311733	2	RCYPER	XXX_gi|528961840|ref|XP_005211303.1|(pre=D,post=Q);XXX_gi|528961845|ref|XP_005211304.1|(pre=D,post=Q);XXX_gi|156523214|ref|NP_001096021.1|(pre=D,post=Q)	47	-24	1.4825392E-4	5.7338686	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1217 experiment=5	-1	HCD	476.69785	1	-36.653725	2	ARGCSEELS	gi|358418103|ref|XP_600387.4|(pre=R,post=K);gi|528923273|ref|XP_005196452.1|(pre=R,post=K);gi|297488451|ref|XP_002696970.1|(pre=R,post=K);gi|529000951|ref|XP_005222651.1|(pre=R,post=K)	35	-25	1.4944564E-4	5.8797894	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1218 experiment=2	-1	HCD	577.77075	0	-36.338516	2	AMFEELSSLK	XXX_gi|528921178|ref|XP_592304.7|(pre=A,post=G);XXX_gi|528921180|ref|XP_005195747.1|(pre=A,post=G);XXX_gi|528995523|ref|XP_002695913.2|(pre=A,post=G)	45	-22	1.570459E-4	6.2084956	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1238 experiment=2	-1	HCD	455.65408	1	42.005333	3	LIRRQRLRPR	gi|139948503|ref|NP_001077142.1|(pre=K,post=E)	25	-35	1.6960995E-4	6.70519	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1201 experiment=2	-1	HCD	440.18204	1	-28.454306	2	CDDQNKR	gi|528944676|ref|XP_005204734.1|(pre=E,post=S)	44	-21	1.7229663E-4	6.706129	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1210 experiment=3	-1	HCD	461.71622	0	30.008469	2	EACFAVEGP	gi|30794280|ref|NP_851335.1|(pre=K,post=K)	59	-18	1.7894078E-4	7.040246	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1218 experiment=3	-1	HCD	471.21652	1	-38.450603	3	SKEVSNLEFSDR	gi|528944676|ref|XP_005204734.1|(pre=G,post=K)	57	-27	1.8095516E-4	7.215225	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1203 experiment=2	-1	HCD	533.7421	0	11.435457	2	EKTGNTSSDQ	XXX_gi|358418103|ref|XP_600387.4|(pre=R,post=L);XXX_gi|528923273|ref|XP_005196452.1|(pre=R,post=L);XXX_gi|297488451|ref|XP_002696970.1|(pre=R,post=L);XXX_gi|529000951|ref|XP_005222651.1|(pre=R,post=L)	87	-24	1.9512225E-4	7.7137675	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1200 experiment=3	-1	HCD	450.20276	1	-42.213696	3	WGLDMERAGGQK	XXX_gi|528961840|ref|XP_005211303.1|(pre=K,post=T);XXX_gi|528961845|ref|XP_005211304.1|(pre=K,post=T);XXX_gi|156523214|ref|NP_001096021.1|(pre=K,post=T)	55	-22	2.0906812E-4	8.336173	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1221 experiment=3	-1	HCD	684.79614	0	-44.82985	2	EGQMVEEKYQK	gi|528944676|ref|XP_005204734.1|(pre=E,post=A);gi|528944678|ref|XP_005204735.1|(pre=E,post=A);gi|219804516|ref|NP_001137332.1|(pre=E,post=A)	85	-34	2.1989181E-4	8.731244	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1221 experiment=3	-1	HCD	684.79614	1	-0.043060087	2	NTPDVMMSDTEK	XXX_gi|358414198|ref|XP_002700672.2|(pre=D,post=L);XXX_gi|528966552|ref|XP_005211956.1|(pre=D,post=L);XXX_gi|528966554|ref|XP_005211957.1|(pre=D,post=L);XXX_gi|297479727|ref|XP_002690982.1|(pre=D,post=L)	85	-34	2.1989181E-4	8.767746	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1214 experiment=3	-1	HCD	493.20474	0	-27.967207	3	KECGAHSEDAVCTK	XXX_gi|30794280|ref|NP_851335.1|(pre=S,post=A)	82	-35	2.555741E-4	10.270757	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1216 experiment=3	-1	HCD	501.20312	0	-32.8179	3	PDIGDPNWISGDSE	XXX_gi|32880221|ref|NP_872593.1|(pre=K,post=G)	54	-26	3.082045E-4	12.385815	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1199 experiment=2	-1	HCD	608.2569	0	-33.012207	3	ELNPEEGQMVEEKYQ	gi|528944676|ref|XP_005204734.1|(pre=K,post=K);gi|528944678|ref|XP_005204735.1|(pre=K,post=K);gi|219804516|ref|NP_001137332.1|(pre=K,post=K)	76	-38	3.0840118E-4	12.439979	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1201 experiment=4	-1	HCD	792.833	0	-44.263622	2	NQDALTFFNSNQVS	gi|528944676|ref|XP_005204734.1|(pre=R,post=E)	70	-57	3.212409E-4	12.909707	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1197 experiment=2	-1	HCD	474.21048	1	-7.941114	3	DERDAAAESYHR	XXX_gi|32880221|ref|NP_872593.1|(pre=D,post=R)	58	-34	3.288899E-4	13.113828	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1214 experiment=4	-1	HCD	545.8876	1	-14.505296	3	NCNGSAACGLGYDFSR	gi|358414198|ref|XP_002700672.2|(pre=M,post=C);gi|528966552|ref|XP_005211956.1|(pre=M,post=C);gi|528966554|ref|XP_005211957.1|(pre=M,post=C);gi|297479727|ref|XP_002690982.1|(pre=M,post=C)	120	-12	3.4639085E-4	14.023288	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1214 experiment=4	-1	HCD	545.8876	1	-31.845514	3	QSFGLSQEEYGFDGA	gi|28849955|ref|NP_788795.1|(pre=K,post=P);gi|119924469|ref|XP_001252524.1|(pre=K,post=P)	120	-12	3.4639085E-4	13.972368	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1213 experiment=2	-1	HCD	497.69714	0	-42.981766	2	THKMYEAD	XXX_gi|528921178|ref|XP_592304.7|(pre=R,post=D);XXX_gi|528921180|ref|XP_005195747.1|(pre=R,post=D);XXX_gi|528995523|ref|XP_002695913.2|(pre=R,post=D)	49	-28	3.6034102E-4	14.104468	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1225 experiment=2	-1	HCD	550.7279	0	-4.211383	2	AEDEPEWPQ	gi|358418103|ref|XP_600387.4|(pre=R,post=P);gi|528923273|ref|XP_005196452.1|(pre=R,post=P);gi|297488451|ref|XP_002696970.1|(pre=R,post=P);gi|529000951|ref|XP_005222651.1|(pre=R,post=P)	46	-39	3.8618056E-4	15.193888	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1281 experiment=2	-1	HCD	591.74536	0	-37.130566	2	TEGPTYETER	XXX_gi|528944676|ref|XP_005204734.1|(pre=G,post=T)	54	-40	4.2281268E-4	16.715054	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1230 experiment=3	-1	HCD	613.2513	0	-26.174957	3	ASINPNNDSWDYALEE	XXX_gi|528944676|ref|XP_005204734.1|(pre=K,post=E);XXX_gi|528944678|ref|XP_005204735.1|(pre=K,post=E);XXX_gi|219804516|ref|NP_001137332.1|(pre=K,post=E)	66	-34	4.8350522E-4	19.574224	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1218 experiment=5	-1	HCD	587.7718	1	-4.5191565	2	KQEESAEAGAPG	gi|528921178|ref|XP_592304.7|(pre=R,post=G);gi|528921180|ref|XP_005195747.1|(pre=R,post=G);gi|528995523|ref|XP_002695913.2|(pre=R,post=G)	52	-31	4.938522E-4	19.69137	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1201 experiment=3	-1	HCD	512.217	0	-47.184654	2	PFVCLECGR	gi|528908802|ref|XP_005199340.1|(pre=R,post=G);gi|528908804|ref|XP_005199341.1|(pre=R,post=G);gi|528908806|ref|XP_005199342.1|(pre=R,post=G);gi|528908808|ref|XP_005199343.1|(pre=R,post=G);gi|528908810|ref|XP_005199344.1|(pre=R,post=G);gi|528908812|ref|XP_609847.5|(pre=R,post=G);gi|528959647|ref|XP_005210511.1|(pre=R,post=G);gi|528959649|ref|XP_005210512.1|(pre=R,post=G);gi|528959651|ref|XP_005210513.1|(pre=R,post=G);gi|528959653|ref|XP_005210514.1|(pre=R,post=G);gi|528959655|ref|XP_005210515.1|(pre=R,post=G);gi|528959657|ref|XP_002689899.2|(pre=R,post=G)	44	-26	5.290015E-4	20.813036	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1208 experiment=3	-1	HCD	490.20404	0	-36.60451	2	ENLEQAFE	gi|528944676|ref|XP_005204734.1|(pre=R,post=V);gi|528944678|ref|XP_005204735.1|(pre=R,post=V);gi|219804516|ref|NP_001137332.1|(pre=R,post=V)	76	-34	5.55107E-4	21.727999	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1204 experiment=4	-1	HCD	464.18753	0	33.5306	2	WDFDEES	XXX_gi|358418103|ref|XP_600387.4|(pre=R,post=D);XXX_gi|528923273|ref|XP_005196452.1|(pre=R,post=D);XXX_gi|297488451|ref|XP_002696970.1|(pre=R,post=D);XXX_gi|529000951|ref|XP_005222651.1|(pre=R,post=D)	32	-44	6.305883E-4	24.543758	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1204 experiment=4	-1	HCD	464.18753	1	-3.946628	2	HYCGKCCL	gi|528968221|ref|XP_005212615.1|(pre=R,post=T);gi|27807503|ref|NP_777203.1|(pre=R,post=T)	32	-44	6.305883E-4	24.682487	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1208 experiment=2	-1	HCD	621.2553	0	-28.981401	2	PPGAQGAEGGGSAEG	XXX_gi|528961840|ref|XP_005211303.1|(pre=K,post=G);XXX_gi|528961845|ref|XP_005211304.1|(pre=K,post=G);XXX_gi|156523214|ref|NP_001096021.1|(pre=K,post=G)	77	-40	6.3325354E-4	25.543549	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1194 experiment=2	-1	HCD	452.19724	1	-21.49735	3	NQQPSLDQAHES	XXX_gi|528944676|ref|XP_005204734.1|(pre=R,post=I)	59	-42	7.1842485E-4	28.645754	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1213 experiment=4	-1	HCD	413.67368	1	-44.75563	2	EGDYVSR	XXX_gi|528968104|ref|XP_005212567.1|(pre=E,post=L);XXX_gi|528968106|ref|XP_005212568.1|(pre=E,post=L);XXX_gi|528968108|ref|XP_005212569.1|(pre=E,post=L);XXX_gi|115497338|ref|NP_001069884.1|(pre=E,post=L)	43	-33	8.442974E-4	32.861744	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1200 experiment=2	-1	HCD	563.21234	0	15.388735	2	EEDASSCQEQ	gi|528944676|ref|XP_005204734.1|(pre=R,post=L);gi|528944678|ref|XP_005204735.1|(pre=R,post=L);gi|219804516|ref|NP_001137332.1|(pre=R,post=L)	79	-44	9.1590727E-4	36.20856	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1183 experiment=2	-1	HCD	416.16492	0	8.50641	2	DENYYQ	gi|528944676|ref|XP_005204734.1|(pre=R,post=L);gi|528944678|ref|XP_005204735.1|(pre=R,post=L);gi|219804516|ref|NP_001137332.1|(pre=R,post=L)	52	-39	9.4161194E-4	36.417786	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1211 experiment=4	-1	HCD	677.26263	1	-22.950554	2	ESEGKGCSMEAPQ	XXX_gi|528944676|ref|XP_005204734.1|(pre=K,post=S)	37	-50	9.469715E-4	37.908215	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1200 experiment=4	-1	HCD	554.21	1	-41.504364	3	GEVAFCAEKDDAACCK	XXX_gi|30794280|ref|NP_851335.1|(pre=P,post=D)	41	-46	0.0010682538	43.247185	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1228 experiment=2	-1	HCD	500.6953	1	-1.0961035	2	MCNFHYQG	gi|528968104|ref|XP_005212567.1|(pre=K,post=F);gi|528968106|ref|XP_005212568.1|(pre=K,post=F);gi|528968108|ref|XP_005212569.1|(pre=K,post=F);gi|115497338|ref|NP_001069884.1|(pre=K,post=F)	54	-36	0.0011096081	43.43228	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1189 experiment=2	-1	HCD	409.6888	1	-8.499589	2	HGRDWF	XXX_gi|528961840|ref|XP_005211303.1|(pre=R,post=Y);XXX_gi|528961845|ref|XP_005211304.1|(pre=R,post=Y);XXX_gi|156523214|ref|NP_001096021.1|(pre=R,post=Y)	75	-35	0.0011373081	43.986526	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1236 experiment=3	-1	HCD	673.7862	0	-47.91735	2	EDLVPWIEDCK	gi|528944676|ref|XP_005204734.1|(pre=V,post=A);gi|528944678|ref|XP_005204735.1|(pre=V,post=A);gi|219804516|ref|NP_001137332.1|(pre=V,post=A)	56	-52	0.0015187213	60.30387	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1198 experiment=2	-1	HCD	437.69327	0	2.5797822	2	MGHDRCR	XXX_gi|528993971|ref|XP_005219929.1|(pre=P,post=Q);XXX_gi|528993973|ref|XP_005219930.1|(pre=P,post=Q);XXX_gi|528993975|ref|XP_005219931.1|(pre=P,post=Q);XXX_gi|27806851|ref|NP_776358.1|(pre=P,post=Q)	55	-41	0.0016426279	63.934364	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1186 experiment=2	-1	HCD	526.19214	1	-35.46674	2	EEEKEEEE	XXX_gi|528921178|ref|XP_592304.7|(pre=K,post=Y);XXX_gi|528921180|ref|XP_005195747.1|(pre=K,post=Y);XXX_gi|528995523|ref|XP_002695913.2|(pre=K,post=Y)	48	-66	0.001955566	76.54477	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1216 experiment=4	-1	HCD	405.65402	1	-36.678707	2	TGNTSSDQ	XXX_gi|358418103|ref|XP_600387.4|(pre=K,post=L);XXX_gi|528923273|ref|XP_005196452.1|(pre=K,post=L);XXX_gi|297488451|ref|XP_002696970.1|(pre=K,post=L);XXX_gi|529000951|ref|XP_005222651.1|(pre=K,post=L)	24	-44	0.0019735042	77.246895	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1199 experiment=3	-1	HCD	495.18527	0	-25.883345	2	YNCDKMIC	gi|528954392|ref|XP_005208526.1|(pre=K,post=R);gi|115496708|ref|NP_001069831.1|(pre=K,post=R)	40	-41	0.0025026577	97.95903	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1199 experiment=3	-1	HCD	495.18527	1	-8.696244	2	CGDCKFNVC	gi|358418103|ref|XP_600387.4|(pre=R,post=K);gi|528923273|ref|XP_005196452.1|(pre=R,post=K);gi|297488451|ref|XP_002696970.1|(pre=R,post=K);gi|529000951|ref|XP_005222651.1|(pre=R,post=K)	40	-41	0.0025026577	98.46456	1.0	1.0
+201208-378803.mzML	sample=1 period=1 cycle=1229 experiment=2	-1	HCD	522.6894	0	46.2436	3	PRALAVAVLCTLILL	XXX_gi|528953234|ref|XP_005208080.1|(pre=K,post=K);XXX_gi|528953236|ref|XP_005208081.1|(pre=K,post=K);XXX_gi|528953238|ref|XP_005208082.1|(pre=K,post=K);XXX_gi|528953240|ref|XP_005208083.1|(pre=K,post=K);XXX_gi|528953246|ref|XP_005208086.1|(pre=K,post=K);XXX_gi|30794348|ref|NP_851372.1|(pre=K,post=K)	65	-53	0.0051770797	208.82787	1.0	1.0
 201208-378803.mzML	sample=1 period=1 cycle=1188 experiment=2	-1	HCD	489.16623	0	-47.910866	3	CTNFSSCWSDGKM	gi|528944676|ref|XP_005204734.1|(pre=K,post=F);gi|528944678|ref|XP_005204735.1|(pre=K,post=F);gi|219804516|ref|NP_001137332.1|(pre=K,post=F)	64	-61	0.0058590886	234.54517	1.0	1.0