Mercurial > repos > galaxyp > msi_filtering
comparison test-data/Example_Continuous.imzML @ 3:d51c3c814d57 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msi_filtering commit a7be47698f53eb4f00961192327d93e8989276a7
| author | galaxyp |
|---|---|
| date | Mon, 11 Jun 2018 17:33:40 -0400 |
| parents | f17d3f1a065f |
| children |
comparison
equal
deleted
inserted
replaced
| 2:22db5eb94e50 | 3:d51c3c814d57 |
|---|---|
| 1 <?xml version="1.0" encoding="ISO-8859-1"?> | 1 <?xml version="1.0"?> |
| 2 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0_idx.xsd" version="1.1"> | 2 <mzML version="1.1" xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0_idx.xsd"> |
| 3 <cvList count="3"> | 3 <cvList count="3"> |
| 4 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="1.3.1" URI="http://psidev.info/ms/mzML/psi-ms.obo"/> | 4 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="1.3.1" URI="http://psidev.info/ms/mzML/psi-ms.obo" /> |
| 5 <cv id="UO" fullName="Unit Ontology" version="1.15" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo"/> | 5 <cv id="UO" fullName="Unit Ontology" version="1.15" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo" /> |
| 6 <cv id="IMS" fullName="Imaging MS Ontology" version="0.9.1" URI="http://www.maldi-msi.org/download/imzml/imagingMS.obo"/> | 6 <cv id="IMS" fullName="Imaging MS Ontology" version="0.9.1" URI="http://www.maldi-msi.org/download/imzml/imagingMS.obo" /> |
| 7 </cvList> | 7 </cvList> |
| 8 <fileDescription> | 8 <fileDescription> |
| 9 <fileContent> | 9 <fileContent> |
| 10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/> | 10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> |
| 11 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value=""/> | 11 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" /> |
| 12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="{554A27FA-79D2-4766-9A2C-862E6D78B1F3}"/> | 12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="{51BB7C6F-9974-4626-B35F-5B65547BAE6B}" /> |
| 13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="A5BE532D25997B71BE6D20C76561DDC4D5307DDD"/> | 13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="26C26A63DCF7CD1AD768A67AEDB7131C5D88C397" /> |
| 14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value=""/> | 14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" /> |
| 15 </fileContent> | 15 </fileContent> |
| 16 <sourceFileList count="1"> | 16 </fileDescription> |
| 17 <sourceFile id="sf1" name="Example.raw" location="C:\Users\Thorsten Schramm\Documents\Promotion\imzML\Website\files\Beispiel-Dateien\Example images\"> | 17 <referenceableParamGroupList count="4"> |
| 18 <cvParam cvRef="MS" accession="MS:1000563" name="Thermo RAW file" value=""/> | 18 <referenceableParamGroup id="spectrum1"> |
| 19 <cvParam cvRef="MS" accession="MS:1000768" name="Thermo nativeID format" value=""/> | 19 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> |
| 20 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="7623BE263B25FF99FDF017154B86FAB742D4BB0B"/> | 20 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="0" /> |
| 21 </sourceFile> | 21 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" /> |
| 22 </sourceFileList> | 22 </referenceableParamGroup> |
| 23 <contact> | 23 <referenceableParamGroup id="scan1"> |
| 24 <cvParam cvRef="MS" accession="MS:1000586" name="contact name" value="Thorsten Schramm"/> | 24 <cvParam cvRef="MS" accession="MS:1000093" name="increasing m/z scan" value="" /> |
| 25 <cvParam cvRef="MS" accession="MS:1000590" name="contact organization" value="Institut für Anorganische und Analytische Chemie"/> | 25 <cvParam cvRef="MS" accession="MS:1000095" name="linear" value="" /> |
| 26 <cvParam cvRef="MS" accession="MS:1000587" name="contact address" value="Schubertstraße 60, Haus 16, Gießen, Germany"/> | 26 </referenceableParamGroup> |
| 27 <cvParam cvRef="MS" accession="MS:1000589" name="contact email" value="thorsten.schramm@anorg.chemie.uni-.giessen.de"/> | 27 <referenceableParamGroup id="mzArray"> |
| 28 </contact> | 28 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" /> |
| 29 </fileDescription> | 29 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z" /> |
| 30 <referenceableParamGroupList count="4"> | 30 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" /> |
| 31 <referenceableParamGroup id="mzArray"> | 31 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="32-bit float" /> |
| 32 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/> | 32 </referenceableParamGroup> |
| 33 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/> | 33 <referenceableParamGroup id="intensityArray"> |
| 34 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true"/> | 34 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" /> |
| 35 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/> | 35 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of counts" /> |
| 36 </referenceableParamGroup> | 36 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" /> |
| 37 <referenceableParamGroup id="intensityArray"> | 37 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="32-bit float" /> |
| 38 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/> | 38 </referenceableParamGroup> |
| 39 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of counts"/> | 39 </referenceableParamGroupList> |
| 40 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true"/> | 40 <sampleList count="1"> |
| 41 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/> | 41 <sample id="sample1" name="Sample1"> |
| 42 </referenceableParamGroup> | 42 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" /> |
| 43 <referenceableParamGroup id="scan1"> | 43 </sample> |
| 44 <cvParam cvRef="MS" accession="MS:1000093" name="increasing m/z scan" value=""/> | 44 </sampleList> |
| 45 <cvParam cvRef="MS" accession="MS:1000095" name="linear" value=""/> | 45 <softwareList count="1"> |
| 46 <cvParam cvRef="MS" accession="MS:1000512" name="filter string" value="ITMS - p NSI Full ms [100,00-800,00]"/> | 46 <software id="Cardinal" version="1.12.0"> |
| 47 </referenceableParamGroup> | 47 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> |
| 48 <referenceableParamGroup id="spectrum1"> | 48 </software> |
| 49 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/> | 49 </softwareList> |
| 50 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="0"/> | 50 <scanSettingsList count="1"> |
| 51 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value=""/> | 51 <scanSettings id="scansettings1"> |
| 52 <cvParam cvRef="MS" accession="MS:1000129" name="negative scan" value=""/> | 52 <cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="3" /> |
| 53 </referenceableParamGroup> | 53 <cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="3" /> |
| 54 </referenceableParamGroupList> | 54 </scanSettings> |
| 55 <sampleList count="1"> | 55 </scanSettingsList> |
| 56 <sample id="sample1" name="Sample1"> | 56 <instrumentConfigurationList count="1"> |
| 57 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1"/> | 57 <instrumentConfiguration id="IC1" /> |
| 58 </sample> | 58 </instrumentConfigurationList> |
| 59 </sampleList> | 59 <dataProcessingList count="1"> |
| 60 <softwareList count="2"> | 60 <dataProcessing id="CardinalWriteImzML"> |
| 61 <software id="Xcalibur" version="2.2"> | 61 <processingMethod order="1" softwareRef="Cardinal"> |
| 62 <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur" value=""/> | 62 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value="" /> |
| 63 </software> | 63 </processingMethod> |
| 64 <software id="TMC" version="1.1 beta"> | 64 </dataProcessing> |
| 65 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value=""/> | 65 </dataProcessingList> |
| 66 </software> | 66 <run defaultInstrumentConfigurationRef="IC1" id="Experiment01" sampleRef="sample1"> |
| 67 </softwareList> | 67 <spectrumList count="9" defaultDataProcessingRef="CardinalWriteImzML"> |
| 68 <scanSettingsList count="1"> | 68 <spectrum id="Spectrum=1" defaultArrayLength="0" index="1"> |
| 69 <scanSettings id="scansettings1"> | 69 <referenceableParamGroupRef ref="spectrum1" /> |
| 70 <cvParam cvRef="IMS" accession="IMS:1000401" name="top down" value=""/> | 70 <scanList count="1"> |
| 71 <cvParam cvRef="IMS" accession="IMS:1000413" name="flyback" value=""/> | 71 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
| 72 <cvParam cvRef="IMS" accession="IMS:1000480" name="horizontal line scan" value=""/> | 72 <scan instrumentConfigurationRef="IC1"> |
| 73 <cvParam cvRef="IMS" accession="IMS:1000491" name="linescan left right" value=""/> | 73 <referenceableParamGroupRef ref="scan1" /> |
| 74 <cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="3"/> | 74 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> |
| 75 <cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="3"/> | 75 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> |
| 76 <cvParam cvRef="IMS" accession="IMS:1000044" name="max dimension x" value="300" unitCvRef="UO" unitAccession="UO:0000017" unitName="micrometer"/> | 76 </scan> |
| 77 <cvParam cvRef="IMS" accession="IMS:1000045" name="max dimension y" value="300" unitCvRef="UO" unitAccession="UO:0000017" unitName="micrometer"/> | 77 </scanList> |
| 78 <cvParam cvRef="IMS" accession="IMS:1000046" name="pixel size x" value="100" unitCvRef="UO" unitAccession="UO:0000017" unitName="micrometer"/> | 78 <binaryDataArrayList count="2"> |
| 79 <cvParam cvRef="IMS" accession="IMS:1000047" name="pixel size y" value="100" unitCvRef="UO" unitAccession="UO:0000017" unitName="micrometer"/> | 79 <binaryDataArray encodedLength="0"> |
| 80 <cvParam cvRef="MS" accession="MS:1000836" name="dried dropplet" value=""/> | 80 <referenceableParamGroupRef ref="mzArray" /> |
| 81 <cvParam cvRef="MS" accession="MS:1000835" name="matrix solution concentration" value="10"/> | 81 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
| 82 <cvParam cvRef="MS" accession="MS:1000834" name="matrix solution" value="DHB"/> | 82 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 83 </scanSettings> | 83 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 84 </scanSettingsList> | 84 <binary /> |
| 85 <instrumentConfigurationList count="1"> | 85 </binaryDataArray> |
| 86 <instrumentConfiguration id="LTQFTUltra0"> | 86 <binaryDataArray encodedLength="0"> |
| 87 <cvParam cvRef="MS" accession="MS:1000557" name="LTQ FT Ultra" value=""/> | 87 <referenceableParamGroupRef ref="intensityArray" /> |
| 88 <cvParam cvRef="MS" accession="MS:1000529" name="instrument serial number" value="none"/> | 88 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="4812" /> |
| 89 <componentList count="3"> | 89 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 90 <source order="1"> | 90 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 91 <cvParam cvRef="MS" accession="MS:1000073" name="electrospray ionization" value=""/> | 91 <binary /> |
| 92 <cvParam cvRef="MS" accession="MS:1000485" name="nanospray inlet" value=""/> | 92 </binaryDataArray> |
| 93 <cvParam cvRef="MS" accession="MS:1000843" name="wavelength" value="337"/> | 93 </binaryDataArrayList> |
| 94 <cvParam cvRef="MS" accession="MS:1000844" name="focus diameter x" value="10"/> | 94 </spectrum> |
| 95 <cvParam cvRef="MS" accession="MS:1000845" name="focus diameter y" value="10"/> | 95 <spectrum id="Spectrum=2" defaultArrayLength="0" index="2"> |
| 96 <cvParam cvRef="MS" accession="MS:1000846" name="pulse energy" value="10"/> | 96 <referenceableParamGroupRef ref="spectrum1" /> |
| 97 <cvParam cvRef="MS" accession="MS:1000847" name="pulse duration" value="10"/> | 97 <scanList count="1"> |
| 98 <cvParam cvRef="MS" accession="MS:1000848" name="attenuation" value="50"/> | 98 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
| 99 <cvParam cvRef="MS" accession="MS:1000850" name="gas laser" value=""/> | 99 <scan instrumentConfigurationRef="IC1"> |
| 100 <cvParam cvRef="IMS" accession="IMS:1000202" name="target material" value="Conductive Glas"/> | 100 <referenceableParamGroupRef ref="scan1" /> |
| 101 </source> | 101 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="2" /> |
| 102 <analyzer order="2"> | 102 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> |
| 103 <cvParam cvRef="MS" accession="MS:1000264" name="ion trap" value=""/> | 103 </scan> |
| 104 <cvParam cvRef="MS" accession="MS:1000014" name="accuracy" value="0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/> | 104 </scanList> |
| 105 </analyzer> | 105 <binaryDataArrayList count="2"> |
| 106 <detector order="3"> | 106 <binaryDataArray encodedLength="0"> |
| 107 <cvParam cvRef="MS" accession="MS:1000253" name="electron multiplier" value=""/> | 107 <referenceableParamGroupRef ref="mzArray" /> |
| 108 <cvParam cvRef="MS" accession="MS:1000120" name="transient recorder" value=""/> | 108 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
| 109 </detector> | 109 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 110 </componentList> | 110 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 111 <softwareRef ref="Xcalibur"/> | 111 <binary /> |
| 112 </instrumentConfiguration> | 112 </binaryDataArray> |
| 113 </instrumentConfigurationList> | 113 <binaryDataArray encodedLength="0"> |
| 114 <dataProcessingList count="2"> | 114 <referenceableParamGroupRef ref="intensityArray" /> |
| 115 <dataProcessing id="XcaliburProcessing"> | 115 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="9608" /> |
| 116 <processingMethod order="1" softwareRef="Xcalibur"> | 116 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 117 <cvParam cvRef="MS" accession="MS:1000594" name="low intensity data point removal" value=""/> | 117 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 118 </processingMethod> | 118 <binary /> |
| 119 </dataProcessing> | 119 </binaryDataArray> |
| 120 <dataProcessing id="TMCConversion"> | 120 </binaryDataArrayList> |
| 121 <processingMethod order="2" softwareRef="TMC"> | 121 </spectrum> |
| 122 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/> | 122 <spectrum id="Spectrum=3" defaultArrayLength="0" index="3"> |
| 123 </processingMethod> | 123 <referenceableParamGroupRef ref="spectrum1" /> |
| 124 </dataProcessing> | 124 <scanList count="1"> |
| 125 </dataProcessingList> | 125 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
| 126 <run defaultInstrumentConfigurationRef="LTQFTUltra0" defaultSourceFileRef="sf1" id="Experiment01" sampleRef="sample1" startTimeStamp="2009-08-11T15:59:44"> | 126 <scan instrumentConfigurationRef="IC1"> |
| 127 <spectrumList count="9" defaultDataProcessingRef="XcaliburProcessing"> | 127 <referenceableParamGroupRef ref="scan1" /> |
| 128 <spectrum id="Scan=1" defaultArrayLength="0" index="0"> | 128 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3" /> |
| 129 <referenceableParamGroupRef ref="spectrum1"/> | 129 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> |
| 130 <scanList count="1"> | 130 </scan> |
| 131 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/> | 131 </scanList> |
| 132 <scan instrumentConfigurationRef="LTQFTUltra0"> | 132 <binaryDataArrayList count="2"> |
| 133 <referenceableParamGroupRef ref="scan1"/> | 133 <binaryDataArray encodedLength="0"> |
| 134 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1"/> | 134 <referenceableParamGroupRef ref="mzArray" /> |
| 135 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1"/> | 135 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
| 136 </scan> | 136 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 137 </scanList> | 137 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 138 <binaryDataArrayList count="2"> | 138 <binary /> |
| 139 <binaryDataArray encodedLength="0"> | 139 </binaryDataArray> |
| 140 <referenceableParamGroupRef ref="mzArray"/> | 140 <binaryDataArray encodedLength="0"> |
| 141 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | 141 <referenceableParamGroupRef ref="intensityArray" /> |
| 142 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16"/> | 142 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="14404" /> |
| 143 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | 143 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 144 <binary/> | 144 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 145 </binaryDataArray> | 145 <binary /> |
| 146 <binaryDataArray encodedLength="0"> | 146 </binaryDataArray> |
| 147 <referenceableParamGroupRef ref="intensityArray"/> | 147 </binaryDataArrayList> |
| 148 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | 148 </spectrum> |
| 149 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="33612"/> | 149 <spectrum id="Spectrum=4" defaultArrayLength="0" index="4"> |
| 150 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | 150 <referenceableParamGroupRef ref="spectrum1" /> |
| 151 <binary/> | 151 <scanList count="1"> |
| 152 </binaryDataArray> | 152 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
| 153 </binaryDataArrayList> | 153 <scan instrumentConfigurationRef="IC1"> |
| 154 </spectrum> | 154 <referenceableParamGroupRef ref="scan1" /> |
| 155 <spectrum id="Scan=2" defaultArrayLength="0" index="1"> | 155 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> |
| 156 <referenceableParamGroupRef ref="spectrum1"/> | 156 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> |
| 157 <scanList count="1"> | 157 </scan> |
| 158 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/> | 158 </scanList> |
| 159 <scan instrumentConfigurationRef="LTQFTUltra0"> | 159 <binaryDataArrayList count="2"> |
| 160 <referenceableParamGroupRef ref="scan1"/> | 160 <binaryDataArray encodedLength="0"> |
| 161 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="2"/> | 161 <referenceableParamGroupRef ref="mzArray" /> |
| 162 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1"/> | 162 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
| 163 </scan> | 163 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 164 </scanList> | 164 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 165 <binaryDataArrayList count="2"> | 165 <binary /> |
| 166 <binaryDataArray encodedLength="0"> | 166 </binaryDataArray> |
| 167 <referenceableParamGroupRef ref="mzArray"/> | 167 <binaryDataArray encodedLength="0"> |
| 168 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | 168 <referenceableParamGroupRef ref="intensityArray" /> |
| 169 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16"/> | 169 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="19200" /> |
| 170 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | 170 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 171 <binary/> | 171 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 172 </binaryDataArray> | 172 <binary /> |
| 173 <binaryDataArray encodedLength="0"> | 173 </binaryDataArray> |
| 174 <referenceableParamGroupRef ref="intensityArray"/> | 174 </binaryDataArrayList> |
| 175 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | 175 </spectrum> |
| 176 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="67208"/> | 176 <spectrum id="Spectrum=5" defaultArrayLength="0" index="5"> |
| 177 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | 177 <referenceableParamGroupRef ref="spectrum1" /> |
| 178 <binary/> | 178 <scanList count="1"> |
| 179 </binaryDataArray> | 179 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
| 180 </binaryDataArrayList> | 180 <scan instrumentConfigurationRef="IC1"> |
| 181 </spectrum> | 181 <referenceableParamGroupRef ref="scan1" /> |
| 182 <spectrum id="Scan=3" defaultArrayLength="0" index="2"> | 182 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="2" /> |
| 183 <referenceableParamGroupRef ref="spectrum1"/> | 183 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> |
| 184 <scanList count="1"> | 184 </scan> |
| 185 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/> | 185 </scanList> |
| 186 <scan instrumentConfigurationRef="LTQFTUltra0"> | 186 <binaryDataArrayList count="2"> |
| 187 <referenceableParamGroupRef ref="scan1"/> | 187 <binaryDataArray encodedLength="0"> |
| 188 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3"/> | 188 <referenceableParamGroupRef ref="mzArray" /> |
| 189 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1"/> | 189 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
| 190 </scan> | 190 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 191 </scanList> | 191 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 192 <binaryDataArrayList count="2"> | 192 <binary /> |
| 193 <binaryDataArray encodedLength="0"> | 193 </binaryDataArray> |
| 194 <referenceableParamGroupRef ref="mzArray"/> | 194 <binaryDataArray encodedLength="0"> |
| 195 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | 195 <referenceableParamGroupRef ref="intensityArray" /> |
| 196 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16"/> | 196 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="23996" /> |
| 197 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | 197 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 198 <binary/> | 198 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 199 </binaryDataArray> | 199 <binary /> |
| 200 <binaryDataArray encodedLength="0"> | 200 </binaryDataArray> |
| 201 <referenceableParamGroupRef ref="intensityArray"/> | 201 </binaryDataArrayList> |
| 202 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | 202 </spectrum> |
| 203 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="100804"/> | 203 <spectrum id="Spectrum=6" defaultArrayLength="0" index="6"> |
| 204 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | 204 <referenceableParamGroupRef ref="spectrum1" /> |
| 205 <binary/> | 205 <scanList count="1"> |
| 206 </binaryDataArray> | 206 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
| 207 </binaryDataArrayList> | 207 <scan instrumentConfigurationRef="IC1"> |
| 208 </spectrum> | 208 <referenceableParamGroupRef ref="scan1" /> |
| 209 <spectrum id="Scan=4" defaultArrayLength="0" index="3"> | 209 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3" /> |
| 210 <referenceableParamGroupRef ref="spectrum1"/> | 210 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> |
| 211 <scanList count="1"> | 211 </scan> |
| 212 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/> | 212 </scanList> |
| 213 <scan instrumentConfigurationRef="LTQFTUltra0"> | 213 <binaryDataArrayList count="2"> |
| 214 <referenceableParamGroupRef ref="scan1"/> | 214 <binaryDataArray encodedLength="0"> |
| 215 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1"/> | 215 <referenceableParamGroupRef ref="mzArray" /> |
| 216 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2"/> | 216 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
| 217 </scan> | 217 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 218 </scanList> | 218 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 219 <binaryDataArrayList count="2"> | 219 <binary /> |
| 220 <binaryDataArray encodedLength="0"> | 220 </binaryDataArray> |
| 221 <referenceableParamGroupRef ref="mzArray"/> | 221 <binaryDataArray encodedLength="0"> |
| 222 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | 222 <referenceableParamGroupRef ref="intensityArray" /> |
| 223 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16"/> | 223 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="28792" /> |
| 224 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | 224 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 225 <binary/> | 225 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 226 </binaryDataArray> | 226 <binary /> |
| 227 <binaryDataArray encodedLength="0"> | 227 </binaryDataArray> |
| 228 <referenceableParamGroupRef ref="intensityArray"/> | 228 </binaryDataArrayList> |
| 229 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | 229 </spectrum> |
| 230 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="134400"/> | 230 <spectrum id="Spectrum=7" defaultArrayLength="0" index="7"> |
| 231 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | 231 <referenceableParamGroupRef ref="spectrum1" /> |
| 232 <binary/> | 232 <scanList count="1"> |
| 233 </binaryDataArray> | 233 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
| 234 </binaryDataArrayList> | 234 <scan instrumentConfigurationRef="IC1"> |
| 235 </spectrum> | 235 <referenceableParamGroupRef ref="scan1" /> |
| 236 <spectrum id="Scan=5" defaultArrayLength="0" index="4"> | 236 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> |
| 237 <referenceableParamGroupRef ref="spectrum1"/> | 237 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> |
| 238 <scanList count="1"> | 238 </scan> |
| 239 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/> | 239 </scanList> |
| 240 <scan instrumentConfigurationRef="LTQFTUltra0"> | 240 <binaryDataArrayList count="2"> |
| 241 <referenceableParamGroupRef ref="scan1"/> | 241 <binaryDataArray encodedLength="0"> |
| 242 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="2"/> | 242 <referenceableParamGroupRef ref="mzArray" /> |
| 243 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2"/> | 243 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
| 244 </scan> | 244 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 245 </scanList> | 245 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 246 <binaryDataArrayList count="2"> | 246 <binary /> |
| 247 <binaryDataArray encodedLength="0"> | 247 </binaryDataArray> |
| 248 <referenceableParamGroupRef ref="mzArray"/> | 248 <binaryDataArray encodedLength="0"> |
| 249 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | 249 <referenceableParamGroupRef ref="intensityArray" /> |
| 250 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16"/> | 250 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="33588" /> |
| 251 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | 251 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 252 <binary/> | 252 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 253 </binaryDataArray> | 253 <binary /> |
| 254 <binaryDataArray encodedLength="0"> | 254 </binaryDataArray> |
| 255 <referenceableParamGroupRef ref="intensityArray"/> | 255 </binaryDataArrayList> |
| 256 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | 256 </spectrum> |
| 257 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="167996"/> | 257 <spectrum id="Spectrum=8" defaultArrayLength="0" index="8"> |
| 258 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | 258 <referenceableParamGroupRef ref="spectrum1" /> |
| 259 <binary/> | 259 <scanList count="1"> |
| 260 </binaryDataArray> | 260 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
| 261 </binaryDataArrayList> | 261 <scan instrumentConfigurationRef="IC1"> |
| 262 </spectrum> | 262 <referenceableParamGroupRef ref="scan1" /> |
| 263 <spectrum id="Scan=6" defaultArrayLength="0" index="5"> | 263 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="2" /> |
| 264 <referenceableParamGroupRef ref="spectrum1"/> | 264 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> |
| 265 <scanList count="1"> | 265 </scan> |
| 266 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/> | 266 </scanList> |
| 267 <scan instrumentConfigurationRef="LTQFTUltra0"> | 267 <binaryDataArrayList count="2"> |
| 268 <referenceableParamGroupRef ref="scan1"/> | 268 <binaryDataArray encodedLength="0"> |
| 269 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3"/> | 269 <referenceableParamGroupRef ref="mzArray" /> |
| 270 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2"/> | 270 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
| 271 </scan> | 271 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 272 </scanList> | 272 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 273 <binaryDataArrayList count="2"> | 273 <binary /> |
| 274 <binaryDataArray encodedLength="0"> | 274 </binaryDataArray> |
| 275 <referenceableParamGroupRef ref="mzArray"/> | 275 <binaryDataArray encodedLength="0"> |
| 276 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | 276 <referenceableParamGroupRef ref="intensityArray" /> |
| 277 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16"/> | 277 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="38384" /> |
| 278 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | 278 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 279 <binary/> | 279 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 280 </binaryDataArray> | 280 <binary /> |
| 281 <binaryDataArray encodedLength="0"> | 281 </binaryDataArray> |
| 282 <referenceableParamGroupRef ref="intensityArray"/> | 282 </binaryDataArrayList> |
| 283 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | 283 </spectrum> |
| 284 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="201592"/> | 284 <spectrum id="Spectrum=9" defaultArrayLength="0" index="9"> |
| 285 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | 285 <referenceableParamGroupRef ref="spectrum1" /> |
| 286 <binary/> | 286 <scanList count="1"> |
| 287 </binaryDataArray> | 287 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
| 288 </binaryDataArrayList> | 288 <scan instrumentConfigurationRef="IC1"> |
| 289 </spectrum> | 289 <referenceableParamGroupRef ref="scan1" /> |
| 290 <spectrum id="Scan=7" defaultArrayLength="0" index="6"> | 290 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3" /> |
| 291 <referenceableParamGroupRef ref="spectrum1"/> | 291 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> |
| 292 <scanList count="1"> | 292 </scan> |
| 293 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/> | 293 </scanList> |
| 294 <scan instrumentConfigurationRef="LTQFTUltra0"> | 294 <binaryDataArrayList count="2"> |
| 295 <referenceableParamGroupRef ref="scan1"/> | 295 <binaryDataArray encodedLength="0"> |
| 296 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1"/> | 296 <referenceableParamGroupRef ref="mzArray" /> |
| 297 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3"/> | 297 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
| 298 </scan> | 298 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 299 </scanList> | 299 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 300 <binaryDataArrayList count="2"> | 300 <binary /> |
| 301 <binaryDataArray encodedLength="0"> | 301 </binaryDataArray> |
| 302 <referenceableParamGroupRef ref="mzArray"/> | 302 <binaryDataArray encodedLength="0"> |
| 303 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | 303 <referenceableParamGroupRef ref="intensityArray" /> |
| 304 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16"/> | 304 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="43180" /> |
| 305 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | 305 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="1199" /> |
| 306 <binary/> | 306 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="4796" /> |
| 307 </binaryDataArray> | 307 <binary /> |
| 308 <binaryDataArray encodedLength="0"> | 308 </binaryDataArray> |
| 309 <referenceableParamGroupRef ref="intensityArray"/> | 309 </binaryDataArrayList> |
| 310 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | 310 </spectrum> |
| 311 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="235188"/> | 311 </spectrumList> |
| 312 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | 312 </run> |
| 313 <binary/> | |
| 314 </binaryDataArray> | |
| 315 </binaryDataArrayList> | |
| 316 </spectrum> | |
| 317 <spectrum id="Scan=8" defaultArrayLength="0" index="7"> | |
| 318 <referenceableParamGroupRef ref="spectrum1"/> | |
| 319 <scanList count="1"> | |
| 320 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/> | |
| 321 <scan instrumentConfigurationRef="LTQFTUltra0"> | |
| 322 <referenceableParamGroupRef ref="scan1"/> | |
| 323 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="2"/> | |
| 324 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3"/> | |
| 325 </scan> | |
| 326 </scanList> | |
| 327 <binaryDataArrayList count="2"> | |
| 328 <binaryDataArray encodedLength="0"> | |
| 329 <referenceableParamGroupRef ref="mzArray"/> | |
| 330 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | |
| 331 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16"/> | |
| 332 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | |
| 333 <binary/> | |
| 334 </binaryDataArray> | |
| 335 <binaryDataArray encodedLength="0"> | |
| 336 <referenceableParamGroupRef ref="intensityArray"/> | |
| 337 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | |
| 338 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="268784"/> | |
| 339 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | |
| 340 <binary/> | |
| 341 </binaryDataArray> | |
| 342 </binaryDataArrayList> | |
| 343 </spectrum> | |
| 344 <spectrum id="Scan=9" defaultArrayLength="0" index="8"> | |
| 345 <referenceableParamGroupRef ref="spectrum1"/> | |
| 346 <scanList count="1"> | |
| 347 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/> | |
| 348 <scan instrumentConfigurationRef="LTQFTUltra0"> | |
| 349 <referenceableParamGroupRef ref="scan1"/> | |
| 350 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3"/> | |
| 351 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3"/> | |
| 352 </scan> | |
| 353 </scanList> | |
| 354 <binaryDataArrayList count="2"> | |
| 355 <binaryDataArray encodedLength="0"> | |
| 356 <referenceableParamGroupRef ref="mzArray"/> | |
| 357 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | |
| 358 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16"/> | |
| 359 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | |
| 360 <binary/> | |
| 361 </binaryDataArray> | |
| 362 <binaryDataArray encodedLength="0"> | |
| 363 <referenceableParamGroupRef ref="intensityArray"/> | |
| 364 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> | |
| 365 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="302380"/> | |
| 366 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="33596"/> | |
| 367 <binary/> | |
| 368 </binaryDataArray> | |
| 369 </binaryDataArrayList> | |
| 370 </spectrum> | |
| 371 </spectrumList> | |
| 372 </run> | |
| 373 </mzML> | 313 </mzML> |