comparison msi_ion_images.xml @ 3:616b98c235fb draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msi_ion_images commit 06c2b45d8644b1d7fc01622a5c59dcbf8886d0f1

2:b2ad54eabcca

<tool id="mass_spectrometry_imaging_ion_images" name="MSI ion images" version="1.7.0.2">
    <description>
        mass spectrometry imaging heatmaps
    </description>
    <requirements>
        <requirement type="package" version="1.7.0">bioconductor-cardinal</requirement>

            <option value="adaptive">adaptive</option>
        </param>
        <param name="plusminus_dalton" value="0.25" type="float" label="Mass range" help="plusminus mass window in Dalton"/>
    </inputs>
    <outputs>
        <data format="pdf" name="plots" from_work_dir="heatmaps.pdf" label = "${tool.name} on $infile.display_name"/>
        <data format="tabular" name="pixel_count" label="Number of pixels per mz with intensity"/>
    </outputs>
    <tests>
        <test>
            <param name="infile" value="" ftype="imzml">
                <composite_data value="Example_Continuous.imzML"/>

3:616b98c235fb

<tool id="mass_spectrometry_imaging_ion_images" name="MSI ion images" version="1.7.0.3">
    <description>
        mass spectrometry imaging heatmaps
    </description>
    <requirements>
        <requirement type="package" version="1.7.0">bioconductor-cardinal</requirement>

            <option value="adaptive">adaptive</option>
        </param>
        <param name="plusminus_dalton" value="0.25" type="float" label="Mass range" help="plusminus mass window in Dalton"/>
    </inputs>
    <outputs>
        <data format="pdf" name="plots" from_work_dir="heatmaps.pdf" label = "${tool.name} ${on_string}"/>
        <data format="tabular" name="pixel_count" label="Number of peaks (intensity > 0) per mz"/>
    </outputs>
    <tests>
        <test>
            <param name="infile" value="" ftype="imzml">
                <composite_data value="Example_Continuous.imzML"/>