Mercurial > repos > galaxyp > msi_ion_images
changeset 9:3aac627bd3ee draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msi_ion_images commit 5feaf3d0e0da8cef1241fecc1f4d6f81324594e6
| author | galaxyp |
|---|---|
| date | Wed, 22 Aug 2018 13:42:32 -0400 |
| parents | 6cd561bbb7ee |
| children | |
| files | msi_ion_images.xml |
| diffstat | 1 files changed, 7 insertions(+), 3 deletions(-) [+] |
line wrap: on
line diff
--- a/msi_ion_images.xml Wed Aug 15 05:40:16 2018 -0400 +++ b/msi_ion_images.xml Wed Aug 22 13:42:32 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="mass_spectrometry_imaging_ion_images" name="MSI ion images" version="1.10.0.4"> +<tool id="mass_spectrometry_imaging_ion_images" name="MSI ion images" version="1.10.0.5"> <description> mass spectrometry imaging m/z heatmaps </description> @@ -44,7 +44,11 @@ #elif $infile.ext == 'analyze75' msidata = readAnalyze('infile', attach.only=TRUE) #else - load('infile.RData') + loadRData <- function(fileName){ + load(fileName) + get(ls()[ls() != "fileName"]) + } + msidata = loadRData('infile.RData') #end if @@ -263,7 +267,7 @@ <option value="gaussian">gaussian</option> <option value="adaptive">adaptive</option> </param> - <param name="plusminus_dalton" value="0.25" type="float" label="M/z range" help="plusminus m/z window in Dalton"/> + <param name="plusminus_dalton" value="0.25" type="float" label="M/z range" help="plusminus m/z window"/> <param name="strip" type="boolean" checked="True" display="radio" truevalue="TRUE" falsevalue="FALSE" label="Display m/z value in plot"/> <param name="colorkey" type="boolean" checked="True" display="radio" truevalue="TRUE" falsevalue="FALSE" label="Display colorkey in plot"/> <conditional name="image_cond">