Mercurial > repos > galaxyp > msi_qualitycontrol
comparison msi_qualitycontrol.xml @ 12:c43a7821c030 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msi_qualitycontrol commit a0cadd9fe40da0094dc87bbf5e06a323973a0b42
| author | galaxyp |
|---|---|
| date | Mon, 25 Jun 2018 19:04:29 -0400 |
| parents | 30d0aabb1b46 |
| children | 88e12d270e35 |
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| 11:30d0aabb1b46 | 12:c43a7821c030 |
|---|---|
| 756 }else{key_zoomed = FALSE} | 756 }else{key_zoomed = FALSE} |
| 757 par(mfrow = c(1, 1)) | 757 par(mfrow = c(1, 1)) |
| 758 plot(msidata[minmasspixel:maxmasspixel,], pixel=1:ncol(msidata),main="Average spectrum per sample", | 758 plot(msidata[minmasspixel:maxmasspixel,], pixel=1:ncol(msidata),main="Average spectrum per sample", |
| 759 pixel.groups=msidata\$combined_sample, key=key_zoomed, col=hue_pal()(number_combined),superpose=TRUE) | 759 pixel.groups=msidata\$combined_sample, key=key_zoomed, col=hue_pal()(number_combined),superpose=TRUE) |
| 760 abline(v=c(inputcalibrantmasses[mass] -plusminusvalues[count], inputcalibrantmasses[mass] ,inputcalibrantmasses[mass] +plusminusvalues[count]), col="black", lty=c(3,1,3)) | 760 abline(v=c(inputcalibrantmasses[mass] -plusminusvalues[count], inputcalibrantmasses[mass] ,inputcalibrantmasses[mass] +plusminusvalues[count]), col="black", lty=c(3,1,3)) |
| 761 } | |
| 761 count=count+1 | 762 count=count+1 |
| 762 } | |
| 763 } | 763 } |
| 764 | 764 |
| 765 ######### 17) ppm difference input calibrant m/z and m/z with max intensity in given m/z range######### | 765 ######### 17) ppm difference input calibrant m/z and m/z with max intensity in given m/z range######### |
| 766 | 766 |
| 767 par(mfrow = c(1, 1)) | 767 par(mfrow = c(1, 1)) |