# HG changeset patch
# User galaxyp
# Date 1525761403 14400
# Node ID b86a66dd1a1658e9bbe4ddc86eee1b2fb21c3845
# Parent  5c63fe03ed9eea6ff3e1bf4173b8a51cd4eb0d8b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msi_qualitycontrol commit dd64f41874a56c4e2619bf58ae3681d806cf9b3f

diff -r 5c63fe03ed9e -r b86a66dd1a16 msi_qualitycontrol.xml
--- a/msi_qualitycontrol.xml	Mon Apr 23 17:19:35 2018 -0400
+++ b/msi_qualitycontrol.xml	Tue May 08 02:36:43 2018 -0400
@@ -576,7 +576,7 @@
 
         ### plot the ppm difference theor. mz value to closest mz value: 
 
-        calibrant_names = as.character(calibrant_list[,2])
+        calibrant_names = as.character(inputcalibrants[,2])
         diff_df = data.frame(differencevector, calibrant_names)        
         diff_plot<-ggplot(data=diff_df, aes(x=calibrant_names, y=differencevector)) + geom_col() + theme_minimal() +
         labs(title="Theoretical calibrant mz vs. closest measured mz", x="calibrants", y = "Difference in ppm")+