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comparison msi_spectra_plots.xml @ 8:d0e13a160a6c draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msi_spectra_plots commit 5feaf3d0e0da8cef1241fecc1f4d6f81324594e6
author galaxyp
date Wed, 22 Aug 2018 13:44:57 -0400
parents 7d94faee0731
children ebca696cb024
comparison
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7:7d94faee0731 8:d0e13a160a6c
1 <tool id="mass_spectrometry_imaging_mzplots" name="MSI plot spectra" version="1.10.0.5"> 1 <tool id="mass_spectrometry_imaging_mzplots" name="MSI plot spectra" version="1.10.0.6">
2 <description> 2 <description>
3 mass spectrometry imaging mass spectra plots 3 mass spectrometry imaging mass spectra plots
4 </description> 4 </description>
5 <requirements> 5 <requirements>
6 <requirement type="package" version="1.10.0">bioconductor-cardinal</requirement> 6 <requirement type="package" version="1.10.0">bioconductor-cardinal</requirement>
42 msidata <- readImzML('infile', attach.only=TRUE) 42 msidata <- readImzML('infile', attach.only=TRUE)
43 #end if 43 #end if
44 #elif $infile.ext == 'analyze75' 44 #elif $infile.ext == 'analyze75'
45 msidata = readAnalyze('infile', attach.only=TRUE) 45 msidata = readAnalyze('infile', attach.only=TRUE)
46 #else 46 #else
47 load('infile.RData') 47 loadRData <- function(fileName){
48 load(fileName)
49 get(ls()[ls() != "fileName"])
50 }
51 msidata = loadRData('infile.RData')
48 #end if 52 #end if
49 53
50 ###################################### file properties in numbers ############## 54 ###################################### file properties in numbers ##############
51 55
52 ## Number of features (m/z) 56 ## Number of features (m/z)